Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0243

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0241 and Ga0059261_0242 are separated by 71 nucleotidesGa0059261_0242 and Ga0059261_0243 overlap by 4 nucleotidesGa0059261_0243 and Ga0059261_0244 are separated by 59 nucleotidesGa0059261_0244 and Ga0059261_0245 are separated by 104 nucleotides Ga0059261_0241: Ga0059261_0241 - folylpolyglutamate synthase/dihydrofolate synthase, at 231,074 to 232,408 _0241 Ga0059261_0242: Ga0059261_0242 - hypothetical protein, at 232,480 to 232,908 _0242 Ga0059261_0243: Ga0059261_0243 - Major Facilitator Superfamily, at 232,905 to 234,578 _0243 Ga0059261_0244: Ga0059261_0244 - FOG: CheY-like receiver, at 234,638 to 235,069 _0244 Ga0059261_0245: Ga0059261_0245 - pseudouridine synthase, at 235,174 to 236,376 _0245 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 232.800 kb on + strand, within Ga0059261_0242at 232.800 kb on + strand, within Ga0059261_0242at 232.801 kb on - strand, within Ga0059261_0242at 232.906 kb on + strandat 232.907 kb on - strandat 232.907 kb on - strandat 232.907 kb on - strandat 233.053 kb on + strandat 233.053 kb on + strandat 233.053 kb on + strandat 233.053 kb on + strandat 233.054 kb on - strandat 233.056 kb on + strandat 233.056 kb on + strandat 233.056 kb on + strandat 233.056 kb on + strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.057 kb on - strandat 233.065 kb on + strandat 233.065 kb on + strandat 233.066 kb on - strandat 233.066 kb on - strandat 233.191 kb on + strand, within Ga0059261_0243at 233.191 kb on + strand, within Ga0059261_0243at 233.192 kb on - strand, within Ga0059261_0243at 233.192 kb on - strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.362 kb on + strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.363 kb on - strand, within Ga0059261_0243at 233.423 kb on - strand, within Ga0059261_0243at 233.423 kb on - strand, within Ga0059261_0243at 233.444 kb on + strand, within Ga0059261_0243at 233.444 kb on + strand, within Ga0059261_0243at 233.444 kb on + strand, within Ga0059261_0243at 233.444 kb on + strand, within Ga0059261_0243at 233.444 kb on + strand, within Ga0059261_0243at 233.445 kb on - strand, within Ga0059261_0243at 233.445 kb on - strand, within Ga0059261_0243at 233.445 kb on - strand, within Ga0059261_0243at 233.445 kb on - strand, within Ga0059261_0243at 233.445 kb on - strand, within Ga0059261_0243at 233.446 kb on + strand, within Ga0059261_0243at 233.447 kb on - strand, within Ga0059261_0243at 233.447 kb on - strand, within Ga0059261_0243at 233.447 kb on - strand, within Ga0059261_0243at 233.493 kb on - strand, within Ga0059261_0243at 233.576 kb on + strand, within Ga0059261_0243at 233.577 kb on - strand, within Ga0059261_0243at 233.797 kb on + strand, within Ga0059261_0243at 233.798 kb on - strand, within Ga0059261_0243at 233.798 kb on - strand, within Ga0059261_0243at 233.798 kb on - strand, within Ga0059261_0243at 233.866 kb on + strand, within Ga0059261_0243at 233.866 kb on + strand, within Ga0059261_0243at 233.866 kb on + strand, within Ga0059261_0243at 233.866 kb on + strand, within Ga0059261_0243at 233.867 kb on - strand, within Ga0059261_0243at 233.867 kb on - strand, within Ga0059261_0243at 233.867 kb on - strand, within Ga0059261_0243at 233.867 kb on - strand, within Ga0059261_0243at 233.899 kb on + strand, within Ga0059261_0243at 233.900 kb on - strand, within Ga0059261_0243at 233.900 kb on - strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.043 kb on + strand, within Ga0059261_0243at 234.044 kb on - strand, within Ga0059261_0243at 234.044 kb on - strand, within Ga0059261_0243at 234.044 kb on - strand, within Ga0059261_0243at 234.044 kb on - strandat 234.044 kb on - strand, within Ga0059261_0243at 234.044 kb on - strandat 234.088 kb on + strand, within Ga0059261_0243at 234.089 kb on - strand, within Ga0059261_0243at 234.146 kb on - strand, within Ga0059261_0243at 234.146 kb on - strand, within Ga0059261_0243at 234.370 kb on + strand, within Ga0059261_0243at 234.370 kb on + strandat 234.370 kb on + strand, within Ga0059261_0243at 234.371 kb on - strand, within Ga0059261_0243at 234.371 kb on - strandat 234.371 kb on - strand, within Ga0059261_0243at 234.371 kb on - strand, within Ga0059261_0243at 234.410 kb on + strand, within Ga0059261_0243at 234.410 kb on + strand, within Ga0059261_0243at 234.410 kb on + strand, within Ga0059261_0243at 234.411 kb on - strandat 234.411 kb on - strandat 234.411 kb on - strandat 234.411 kb on - strandat 234.520 kb on + strandat 234.611 kb on - strandat 234.747 kb on + strand, within Ga0059261_0244at 234.747 kb on + strand, within Ga0059261_0244at 234.965 kb on - strand, within Ga0059261_0244at 235.086 kb on + strandat 235.086 kb on + strandat 235.086 kb on + strandat 235.087 kb on - strandat 235.105 kb on - strandat 235.105 kb on - strandat 235.161 kb on + strandat 235.162 kb on - strandat 235.466 kb on - strand, within Ga0059261_0245

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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232,800 + Ga0059261_0242 0.75 -0.4
232,800 + Ga0059261_0242 0.75 -1.0
232,801 - Ga0059261_0242 0.75 -0.4
232,906 + -0.1
232,907 - -0.7
232,907 - -0.4
232,907 - +0.1
233,053 + -3.0
233,053 + -1.3
233,053 + -1.1
233,053 + -1.1
233,054 - -1.1
233,056 + -0.1
233,056 + -0.1
233,056 + -3.7
233,056 + -2.4
233,057 - -2.7
233,057 - -0.9
233,057 - -1.8
233,057 - -2.1
233,057 - -3.5
233,057 - -1.4
233,057 - -3.2
233,065 + -0.8
233,065 + -0.8
233,066 - -2.7
233,066 - -2.0
233,191 + Ga0059261_0243 0.17 -0.4
233,191 + Ga0059261_0243 0.17 -1.7
233,192 - Ga0059261_0243 0.17 -3.0
233,192 - Ga0059261_0243 0.17 -2.7
233,362 + Ga0059261_0243 0.27 -1.9
233,362 + Ga0059261_0243 0.27 -1.8
233,362 + Ga0059261_0243 0.27 -3.5
233,362 + Ga0059261_0243 0.27 -1.6
233,362 + Ga0059261_0243 0.27 -2.3
233,362 + Ga0059261_0243 0.27 -3.8
233,363 - Ga0059261_0243 0.27 -1.3
233,363 - Ga0059261_0243 0.27 -3.7
233,363 - Ga0059261_0243 0.27 -1.6
233,363 - Ga0059261_0243 0.27 -1.7
233,363 - Ga0059261_0243 0.27 -3.1
233,363 - Ga0059261_0243 0.27 -1.8
233,363 - Ga0059261_0243 0.27 -3.2
233,363 - Ga0059261_0243 0.27 -2.4
233,363 - Ga0059261_0243 0.27 -3.1
233,363 - Ga0059261_0243 0.27 -2.6
233,423 - Ga0059261_0243 0.31 -3.4
233,423 - Ga0059261_0243 0.31 -2.9
233,444 + Ga0059261_0243 0.32 -4.4
233,444 + Ga0059261_0243 0.32 -1.4
233,444 + Ga0059261_0243 0.32 -1.1
233,444 + Ga0059261_0243 0.32 -2.8
233,444 + Ga0059261_0243 0.32 -1.2
233,445 - Ga0059261_0243 0.32 -2.3
233,445 - Ga0059261_0243 0.32 -1.3
233,445 - Ga0059261_0243 0.32 -2.3
233,445 - Ga0059261_0243 0.32 -4.0
233,445 - Ga0059261_0243 0.32 -2.9
233,446 + Ga0059261_0243 0.32 -1.9
233,447 - Ga0059261_0243 0.32 -2.7
233,447 - Ga0059261_0243 0.32 -5.0
233,447 - Ga0059261_0243 0.32 -0.8
233,493 - Ga0059261_0243 0.35 -0.1
233,576 + Ga0059261_0243 0.40 -4.2
233,577 - Ga0059261_0243 0.40 -4.3
233,797 + Ga0059261_0243 0.53 -2.2
233,798 - Ga0059261_0243 0.53 -0.2
233,798 - Ga0059261_0243 0.53 -1.9
233,798 - Ga0059261_0243 0.53 -2.1
233,866 + Ga0059261_0243 0.57 -3.9
233,866 + Ga0059261_0243 0.57 -2.2
233,866 + Ga0059261_0243 0.57 -2.2
233,866 + Ga0059261_0243 0.57 -2.0
233,867 - Ga0059261_0243 0.57 -2.8
233,867 - Ga0059261_0243 0.57 -2.8
233,867 - Ga0059261_0243 0.57 -1.5
233,867 - Ga0059261_0243 0.57 -2.5
233,899 + Ga0059261_0243 0.59 -2.8
233,900 - Ga0059261_0243 0.59 -2.9
233,900 - Ga0059261_0243 0.59 -2.3
234,043 + Ga0059261_0243 0.68 -2.8
234,043 + Ga0059261_0243 0.68 -2.7
234,043 + Ga0059261_0243 0.68 -3.6
234,043 + Ga0059261_0243 0.68 -3.2
234,043 + Ga0059261_0243 0.68 -0.6
234,043 + Ga0059261_0243 0.68 -2.4
234,043 + Ga0059261_0243 0.68 -2.1
234,043 + Ga0059261_0243 0.68 -0.1
234,043 + Ga0059261_0243 0.68 -2.1
234,043 + Ga0059261_0243 0.68 -1.3
234,044 - Ga0059261_0243 0.68 -3.2
234,044 - Ga0059261_0243 0.68 -1.1
234,044 - Ga0059261_0243 0.68 -2.6
234,044 - +1.5
234,044 - Ga0059261_0243 0.68 -3.4
234,044 - -0.5
234,088 + Ga0059261_0243 0.71 -2.5
234,089 - Ga0059261_0243 0.71 -3.4
234,146 - Ga0059261_0243 0.74 -1.6
234,146 - Ga0059261_0243 0.74 -2.6
234,370 + Ga0059261_0243 0.88 -3.0
234,370 + -0.8
234,370 + Ga0059261_0243 0.88 -2.5
234,371 - Ga0059261_0243 0.88 -2.3
234,371 - -0.8
234,371 - Ga0059261_0243 0.88 -1.9
234,371 - Ga0059261_0243 0.88 -2.3
234,410 + Ga0059261_0243 0.90 -2.2
234,410 + Ga0059261_0243 0.90 -0.7
234,410 + Ga0059261_0243 0.90 -1.6
234,411 - -0.5
234,411 - -1.8
234,411 - -3.6
234,411 - -3.8
234,520 + -2.3
234,611 - -0.3
234,747 + Ga0059261_0244 0.25 -0.5
234,747 + Ga0059261_0244 0.25 -0.3
234,965 - Ga0059261_0244 0.76 +0.4
235,086 + -1.5
235,086 + -0.0
235,086 + -0.6
235,087 - -0.1
235,105 - -0.1
235,105 - +0.5
235,161 + +0.9
235,162 - -1.2
235,466 - Ga0059261_0245 0.24 -2.2

Or see this region's nucleotide sequence