Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0071

Experiment: Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0069 and Ga0059261_0070 overlap by 2 nucleotidesGa0059261_0070 and Ga0059261_0071 are separated by 4 nucleotidesGa0059261_0071 and Ga0059261_0072 are separated by 200 nucleotidesGa0059261_0072 and Ga0059261_0073 overlap by 1 nucleotides Ga0059261_0069: Ga0059261_0069 - tRNA dimethylallyltransferase, at 61,107 to 62,030 _0069 Ga0059261_0070: Ga0059261_0070 - phosphoserine phosphatase SerB, at 62,029 to 62,970 _0070 Ga0059261_0071: Ga0059261_0071 - Sporulation related domain/Sel1 repeat, at 62,975 to 63,955 _0071 Ga0059261_0072: Ga0059261_0072 - ATPases involved in chromosome partitioning, at 64,156 to 64,869 _0072 Ga0059261_0073: Ga0059261_0073 - hypothetical protein, at 64,869 to 65,492 _0073 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1 2at 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.112 kb on + strandat 62.112 kb on + strandat 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.137 kb on - strand, within Ga0059261_0070at 62.137 kb on - strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.159 kb on - strand, within Ga0059261_0070at 62.159 kb on - strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.932 kb on + strandat 62.932 kb on + strandat 62.933 kb on - strandat 62.933 kb on - strandat 62.976 kb on + strandat 62.976 kb on + strandat 62.976 kb on + strandat 62.977 kb on - strandat 62.977 kb on - strandat 63.084 kb on + strand, within Ga0059261_0071at 63.085 kb on - strand, within Ga0059261_0071at 63.085 kb on - strand, within Ga0059261_0071at 63.085 kb on - strand, within Ga0059261_0071at 63.085 kb on - strand, within Ga0059261_0071at 63.405 kb on + strand, within Ga0059261_0071at 63.405 kb on + strand, within Ga0059261_0071at 63.405 kb on + strand, within Ga0059261_0071at 63.405 kb on + strand, within Ga0059261_0071at 63.406 kb on - strand, within Ga0059261_0071at 63.406 kb on - strand, within Ga0059261_0071at 63.406 kb on - strand, within Ga0059261_0071at 63.406 kb on - strand, within Ga0059261_0071at 63.451 kb on + strand, within Ga0059261_0071at 63.451 kb on + strand, within Ga0059261_0071at 63.451 kb on + strand, within Ga0059261_0071at 63.452 kb on - strand, within Ga0059261_0071at 63.452 kb on - strand, within Ga0059261_0071at 63.525 kb on + strand, within Ga0059261_0071at 63.525 kb on + strand, within Ga0059261_0071at 63.526 kb on - strand, within Ga0059261_0071at 63.526 kb on - strand, within Ga0059261_0071at 63.526 kb on - strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.567 kb on + strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.568 kb on - strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.585 kb on + strand, within Ga0059261_0071at 63.586 kb on - strand, within Ga0059261_0071at 63.586 kb on - strand, within Ga0059261_0071at 63.586 kb on - strand, within Ga0059261_0071at 63.586 kb on - strand, within Ga0059261_0071at 63.675 kb on + strand, within Ga0059261_0071at 63.721 kb on - strand, within Ga0059261_0071at 63.769 kb on + strand, within Ga0059261_0071at 63.769 kb on + strand, within Ga0059261_0071at 63.769 kb on + strand, within Ga0059261_0071at 63.770 kb on - strand, within Ga0059261_0071at 63.770 kb on - strand, within Ga0059261_0071at 63.770 kb on - strand, within Ga0059261_0071at 63.770 kb on - strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strandat 63.771 kb on + strand, within Ga0059261_0071at 63.771 kb on + strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.772 kb on - strand, within Ga0059261_0071at 63.850 kb on - strand, within Ga0059261_0071at 63.850 kb on - strand, within Ga0059261_0071at 63.949 kb on + strandat 63.949 kb on + strandat 63.949 kb on + strandat 63.949 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.956 kb on - strandat 63.956 kb on - strandat 63.956 kb on - strandat 63.991 kb on + strandat 63.992 kb on - strandat 64.039 kb on - strandat 64.039 kb on - strandat 64.103 kb on + strandat 64.103 kb on + strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.164 kb on - strandat 64.411 kb on - strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.005 mg/ml
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62,105 + +0.5
62,105 + +0.4
62,105 + +0.2
62,105 + +1.0
62,105 + +0.6
62,105 + +0.5
62,105 + +0.9
62,106 - +0.5
62,106 - +0.3
62,106 - -0.2
62,106 - -0.1
62,106 - -0.2
62,106 - -0.9
62,106 - +1.0
62,106 - +0.6
62,106 - +1.8
62,112 + +0.6
62,112 + -0.0
62,126 + Ga0059261_0070 0.10 -0.1
62,126 + Ga0059261_0070 0.10 -0.7
62,126 + Ga0059261_0070 0.10 +0.1
62,126 + Ga0059261_0070 0.10 +0.4
62,126 + Ga0059261_0070 0.10 +0.6
62,127 - Ga0059261_0070 0.10 +1.0
62,127 - Ga0059261_0070 0.10 +0.2
62,127 - Ga0059261_0070 0.10 +0.6
62,137 - Ga0059261_0070 0.11 +0.5
62,137 - Ga0059261_0070 0.11 +0.8
62,158 + Ga0059261_0070 0.14 +1.5
62,158 + Ga0059261_0070 0.14 +0.3
62,158 + Ga0059261_0070 0.14 +0.2
62,159 - Ga0059261_0070 0.14 -0.5
62,159 - Ga0059261_0070 0.14 +0.1
62,389 + Ga0059261_0070 0.38 +0.2
62,389 + Ga0059261_0070 0.38 +0.7
62,389 + Ga0059261_0070 0.38 +0.8
62,389 + Ga0059261_0070 0.38 +0.3
62,390 - Ga0059261_0070 0.38 +2.3
62,390 - Ga0059261_0070 0.38 +0.0
62,390 - Ga0059261_0070 0.38 -0.2
62,390 - Ga0059261_0070 0.38 +0.5
62,390 - Ga0059261_0070 0.38 +0.1
62,932 + -0.7
62,932 + -0.1
62,933 - +0.1
62,933 - +0.1
62,976 + -0.6
62,976 + -0.8
62,976 + +0.4
62,977 - +0.3
62,977 - +0.0
63,084 + Ga0059261_0071 0.11 +0.8
63,085 - Ga0059261_0071 0.11 -0.2
63,085 - Ga0059261_0071 0.11 -0.3
63,085 - Ga0059261_0071 0.11 -0.1
63,085 - Ga0059261_0071 0.11 +0.9
63,405 + Ga0059261_0071 0.44 +0.1
63,405 + Ga0059261_0071 0.44 +0.8
63,405 + Ga0059261_0071 0.44 +0.7
63,405 + Ga0059261_0071 0.44 +0.7
63,406 - Ga0059261_0071 0.44 -0.1
63,406 - Ga0059261_0071 0.44 +1.0
63,406 - Ga0059261_0071 0.44 -0.4
63,406 - Ga0059261_0071 0.44 -0.8
63,451 + Ga0059261_0071 0.49 +0.6
63,451 + Ga0059261_0071 0.49 +0.3
63,451 + Ga0059261_0071 0.49 -0.6
63,452 - Ga0059261_0071 0.49 +0.2
63,452 - Ga0059261_0071 0.49 +1.1
63,525 + Ga0059261_0071 0.56 +0.6
63,525 + Ga0059261_0071 0.56 +0.4
63,526 - Ga0059261_0071 0.56 +1.0
63,526 - Ga0059261_0071 0.56 +0.6
63,526 - Ga0059261_0071 0.56 +0.2
63,567 + Ga0059261_0071 0.60 +0.9
63,567 + Ga0059261_0071 0.60 -1.2
63,567 + Ga0059261_0071 0.60 +0.4
63,567 + Ga0059261_0071 0.60 +0.2
63,567 + Ga0059261_0071 0.60 -0.6
63,567 + Ga0059261_0071 0.60 +0.6
63,567 + Ga0059261_0071 0.60 +1.0
63,568 - Ga0059261_0071 0.60 +0.7
63,568 - Ga0059261_0071 0.60 -0.2
63,568 - Ga0059261_0071 0.60 -0.8
63,568 - Ga0059261_0071 0.60 -0.2
63,568 - Ga0059261_0071 0.60 +0.2
63,568 - Ga0059261_0071 0.60 +0.0
63,568 - Ga0059261_0071 0.60 +1.3
63,585 + Ga0059261_0071 0.62 -0.1
63,585 + Ga0059261_0071 0.62 +0.2
63,585 + Ga0059261_0071 0.62 +0.4
63,585 + Ga0059261_0071 0.62 +0.1
63,585 + Ga0059261_0071 0.62 -0.3
63,585 + Ga0059261_0071 0.62 +0.5
63,585 + Ga0059261_0071 0.62 -0.8
63,585 + Ga0059261_0071 0.62 -0.6
63,586 - Ga0059261_0071 0.62 +1.0
63,586 - Ga0059261_0071 0.62 +0.2
63,586 - Ga0059261_0071 0.62 -0.9
63,586 - Ga0059261_0071 0.62 +0.7
63,675 + Ga0059261_0071 0.71 -0.5
63,721 - Ga0059261_0071 0.76 +0.4
63,769 + Ga0059261_0071 0.81 +0.0
63,769 + Ga0059261_0071 0.81 +0.6
63,769 + Ga0059261_0071 0.81 +0.2
63,770 - Ga0059261_0071 0.81 +0.9
63,770 - Ga0059261_0071 0.81 +0.3
63,770 - Ga0059261_0071 0.81 +0.9
63,770 - Ga0059261_0071 0.81 -0.3
63,771 + Ga0059261_0071 0.81 +0.4
63,771 + Ga0059261_0071 0.81 +0.2
63,771 + Ga0059261_0071 0.81 +0.3
63,771 + Ga0059261_0071 0.81 +0.2
63,771 + Ga0059261_0071 0.81 +0.2
63,771 + -0.5
63,771 + Ga0059261_0071 0.81 +0.4
63,771 + Ga0059261_0071 0.81 +1.0
63,772 - Ga0059261_0071 0.81 +0.7
63,772 - Ga0059261_0071 0.81 +0.5
63,772 - Ga0059261_0071 0.81 +0.2
63,772 - Ga0059261_0071 0.81 +1.1
63,772 - Ga0059261_0071 0.81 +0.8
63,772 - Ga0059261_0071 0.81 -0.7
63,850 - Ga0059261_0071 0.89 -0.5
63,850 - Ga0059261_0071 0.89 -0.1
63,949 + +0.2
63,949 + -0.3
63,949 + -0.9
63,949 + +0.6
63,955 + +0.1
63,955 + -0.2
63,955 + +0.5
63,955 + +0.2
63,955 + +0.6
63,956 - -1.3
63,956 - -0.8
63,956 - +0.1
63,991 + +0.3
63,992 - -0.1
64,039 - -0.1
64,039 - -0.8
64,103 + +0.1
64,103 + -0.9
64,104 - +1.6
64,104 - +0.3
64,104 - +0.5
64,104 - +0.2
64,104 - -0.5
64,104 - -0.2
64,164 - -0.2
64,411 - Ga0059261_0072 0.36 +0.5
64,750 + Ga0059261_0072 0.83 +0.6
64,750 + Ga0059261_0072 0.83 -0.4
64,750 + Ga0059261_0072 0.83 +0.1
64,750 + Ga0059261_0072 0.83 -0.0
64,751 - Ga0059261_0072 0.83 +0.9
64,751 - Ga0059261_0072 0.83 +0.3
64,751 - Ga0059261_0072 0.83 -0.3
64,751 - Ga0059261_0072 0.83 +1.5
64,751 - Ga0059261_0072 0.83 -0.1

Or see this region's nucleotide sequence