Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2776
Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with 5-Hydroxymethylfurfural 5 mM |
---|---|---|---|---|---|
remove | |||||
3,510,576 | - | DvMF_2775 | 0.34 | -0.7 | |
3,510,923 | - | DvMF_2775 | 0.64 | -0.6 | |
3,510,937 | - | DvMF_2775 | 0.65 | -0.4 | |
3,511,040 | + | DvMF_2775 | 0.74 | -0.8 | |
3,511,048 | - | DvMF_2775 | 0.74 | -0.4 | |
3,511,050 | + | DvMF_2775 | 0.75 | -0.3 | |
3,511,737 | - | DvMF_2776 | 0.60 | -0.1 | |
3,511,796 | + | DvMF_2776 | 0.71 | -0.3 | |
3,511,804 | - | DvMF_2776 | 0.72 | -0.8 | |
3,512,071 | + | DvMF_2777 | 0.12 | +0.3 | |
3,512,090 | + | DvMF_2777 | 0.14 | +0.6 | |
3,512,166 | - | DvMF_2777 | 0.22 | +0.1 | |
3,512,281 | - | DvMF_2777 | 0.34 | +0.0 | |
3,512,326 | + | DvMF_2777 | 0.39 | -0.2 | |
3,512,326 | + | DvMF_2777 | 0.39 | -0.2 | |
3,512,524 | + | DvMF_2777 | 0.61 | -0.4 | |
3,512,711 | - | DvMF_2777 | 0.81 | -1.2 | |
3,512,782 | + | DvMF_2777 | 0.89 | -0.1 | |
3,512,924 | + | -0.2 |
Or see this region's nucleotide sequence