Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2272 and DvMF_2273 are separated by 697 nucleotides DvMF_2273 and DvMF_2274 are separated by 89 nucleotides
DvMF_2272: DvMF_2272 - hypothetical protein (RefSeq), at 2,854,675 to 2,855,430
_2272
DvMF_2273: DvMF_2273 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,856,128 to 2,859,799
_2273
DvMF_2274: DvMF_2274 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 2,859,889 to 2,861,364
_2274
Position (kb)
2856
2857
2858
2859
2860 Strain fitness (log2 ratio)
-1
0
1 at 2855.483 kb on + strand at 2855.557 kb on + strand at 2855.557 kb on + strand at 2855.557 kb on + strand at 2855.565 kb on - strand at 2855.796 kb on + strand at 2856.203 kb on + strand at 2856.206 kb on - strand at 2856.206 kb on - strand at 2856.221 kb on - strand at 2856.303 kb on + strand at 2856.392 kb on + strand at 2856.398 kb on + strand at 2856.453 kb on + strand at 2856.509 kb on - strand, within DvMF_2273 at 2856.849 kb on + strand, within DvMF_2273 at 2856.882 kb on - strand, within DvMF_2273 at 2856.885 kb on + strand, within DvMF_2273 at 2856.895 kb on + strand, within DvMF_2273 at 2857.003 kb on + strand, within DvMF_2273 at 2857.420 kb on - strand, within DvMF_2273 at 2857.445 kb on + strand, within DvMF_2273 at 2857.776 kb on + strand, within DvMF_2273 at 2857.784 kb on - strand, within DvMF_2273 at 2857.784 kb on - strand, within DvMF_2273 at 2857.902 kb on - strand, within DvMF_2273 at 2857.913 kb on - strand, within DvMF_2273 at 2857.933 kb on - strand, within DvMF_2273 at 2857.961 kb on + strand, within DvMF_2273 at 2858.198 kb on + strand, within DvMF_2273 at 2858.392 kb on - strand, within DvMF_2273 at 2858.443 kb on + strand, within DvMF_2273 at 2858.828 kb on + strand, within DvMF_2273 at 2858.905 kb on + strand, within DvMF_2273 at 2858.919 kb on + strand, within DvMF_2273 at 2859.130 kb on + strand, within DvMF_2273 at 2859.193 kb on + strand, within DvMF_2273 at 2859.296 kb on - strand, within DvMF_2273 at 2859.313 kb on + strand, within DvMF_2273 at 2859.340 kb on - strand, within DvMF_2273 at 2859.887 kb on + strand at 2859.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 5 mM remove 2,855,483 + -0.6 2,855,557 + -0.8 2,855,557 + -0.9 2,855,557 + -1.2 2,855,565 - -0.6 2,855,796 + -0.8 2,856,203 + +0.5 2,856,206 - +0.5 2,856,206 - +0.2 2,856,221 - -0.1 2,856,303 + +0.8 2,856,392 + +0.0 2,856,398 + +0.8 2,856,453 + +0.9 2,856,509 - DvMF_2273 0.10 +0.2 2,856,849 + DvMF_2273 0.20 +1.1 2,856,882 - DvMF_2273 0.21 +0.4 2,856,885 + DvMF_2273 0.21 +0.3 2,856,895 + DvMF_2273 0.21 +0.4 2,857,003 + DvMF_2273 0.24 +0.3 2,857,420 - DvMF_2273 0.35 +0.6 2,857,445 + DvMF_2273 0.36 +0.5 2,857,776 + DvMF_2273 0.45 +0.3 2,857,784 - DvMF_2273 0.45 +0.3 2,857,784 - DvMF_2273 0.45 -0.3 2,857,902 - DvMF_2273 0.48 -0.3 2,857,913 - DvMF_2273 0.49 +0.9 2,857,933 - DvMF_2273 0.49 +0.9 2,857,961 + DvMF_2273 0.50 +0.7 2,858,198 + DvMF_2273 0.56 +0.6 2,858,392 - DvMF_2273 0.62 +0.8 2,858,443 + DvMF_2273 0.63 +0.2 2,858,828 + DvMF_2273 0.74 +0.7 2,858,905 + DvMF_2273 0.76 +0.3 2,858,919 + DvMF_2273 0.76 +0.3 2,859,130 + DvMF_2273 0.82 +0.4 2,859,193 + DvMF_2273 0.83 +0.4 2,859,296 - DvMF_2273 0.86 +0.1 2,859,313 + DvMF_2273 0.87 +0.2 2,859,340 - DvMF_2273 0.87 +0.8 2,859,887 + +0.5 2,859,905 - -0.4
Or see this region's nucleotide sequence