Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0612

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0611 and proA are separated by 483 nucleotidesproA and DvMF_0613 are separated by 155 nucleotides DvMF_0611: DvMF_0611 - hypothetical protein (RefSeq), at 724,106 to 724,801 _0611 DvMF_0612: proA - gamma-glutamyl phosphate reductase (RefSeq), at 725,285 to 726,595 proA DvMF_0613: DvMF_0613 - nicotinate (nicotinamide) nucleotide adenylyltransferase (RefSeq), at 726,751 to 727,605 _0613 Position (kb) 725 726 727Strain fitness (log2 ratio) -2 -1 0 1at 724.298 kb on + strand, within DvMF_0611at 724.375 kb on + strand, within DvMF_0611at 724.566 kb on - strand, within DvMF_0611at 724.812 kb on - strandat 724.975 kb on - strandat 725.019 kb on - strandat 725.051 kb on + strandat 725.061 kb on - strandat 725.063 kb on + strandat 725.085 kb on + strandat 725.784 kb on + strand, within proAat 725.857 kb on - strand, within proAat 726.058 kb on - strand, within proAat 726.351 kb on + strand, within proAat 726.359 kb on - strand, within proAat 726.504 kb on + strandat 727.515 kb on - strand, within DvMF_0613

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 5 mM
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724,298 + DvMF_0611 0.28 -0.4
724,375 + DvMF_0611 0.39 -0.1
724,566 - DvMF_0611 0.66 -0.3
724,812 - -0.3
724,975 - -0.0
725,019 - -0.5
725,051 + +1.0
725,061 - +0.6
725,063 + -1.7
725,085 + +1.0
725,784 + proA DvMF_0612 0.38 -1.2
725,857 - proA DvMF_0612 0.44 -1.2
726,058 - proA DvMF_0612 0.59 -1.6
726,351 + proA DvMF_0612 0.81 -1.4
726,359 - proA DvMF_0612 0.82 -2.7
726,504 + -0.8
727,515 - DvMF_0613 0.89 -0.1

Or see this region's nucleotide sequence