Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0465 and DvMF_0466 overlap by 4 nucleotides DvMF_0466 and DvMF_0467 overlap by 4 nucleotides DvMF_0467 and DvMF_0468 are separated by 577 nucleotides
DvMF_0465: DvMF_0465 - response regulator receiver modulated CheB methylesterase (RefSeq), at 543,275 to 544,345
_0465
DvMF_0466: DvMF_0466 - MCP methyltransferase, CheR-type (RefSeq), at 544,342 to 545,229
_0466
DvMF_0467: DvMF_0467 - CheA signal transduction histidine kinase (RefSeq), at 545,226 to 547,400
_0467
DvMF_0468: DvMF_0468 - response regulator receiver protein (RefSeq), at 547,978 to 548,340
_0468
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 544.341 kb on - strand at 544.601 kb on - strand, within DvMF_0466 at 544.601 kb on - strand, within DvMF_0466 at 544.813 kb on - strand, within DvMF_0466 at 545.039 kb on - strand, within DvMF_0466 at 545.262 kb on - strand at 545.316 kb on + strand at 545.713 kb on + strand, within DvMF_0467 at 545.730 kb on + strand, within DvMF_0467 at 545.779 kb on + strand, within DvMF_0467 at 545.780 kb on - strand, within DvMF_0467 at 546.245 kb on + strand, within DvMF_0467 at 546.253 kb on - strand, within DvMF_0467 at 546.260 kb on + strand, within DvMF_0467 at 546.350 kb on - strand, within DvMF_0467 at 546.416 kb on + strand, within DvMF_0467 at 546.524 kb on - strand, within DvMF_0467 at 547.135 kb on - strand, within DvMF_0467 at 547.162 kb on + strand, within DvMF_0467 at 547.255 kb on - strand at 547.497 kb on - strand at 547.655 kb on - strand at 547.825 kb on - strand at 547.846 kb on - strand at 547.851 kb on - strand at 548.154 kb on + strand, within DvMF_0468 at 548.154 kb on + strand, within DvMF_0468 at 548.154 kb on + strand, within DvMF_0468 at 548.162 kb on - strand, within DvMF_0468 at 548.246 kb on + strand, within DvMF_0468 at 548.265 kb on - strand, within DvMF_0468 at 548.285 kb on - strand, within DvMF_0468 at 548.285 kb on - strand, within DvMF_0468 at 548.304 kb on + strand at 548.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 5 mM remove 544,341 - -0.5 544,601 - DvMF_0466 0.29 -0.6 544,601 - DvMF_0466 0.29 -0.5 544,813 - DvMF_0466 0.53 -0.3 545,039 - DvMF_0466 0.78 -0.9 545,262 - -0.5 545,316 + -0.2 545,713 + DvMF_0467 0.22 -1.3 545,730 + DvMF_0467 0.23 -1.1 545,779 + DvMF_0467 0.25 -1.2 545,780 - DvMF_0467 0.25 -0.4 546,245 + DvMF_0467 0.47 -1.3 546,253 - DvMF_0467 0.47 -0.6 546,260 + DvMF_0467 0.48 +0.3 546,350 - DvMF_0467 0.52 -0.8 546,416 + DvMF_0467 0.55 -1.0 546,524 - DvMF_0467 0.60 -0.3 547,135 - DvMF_0467 0.88 -0.8 547,162 + DvMF_0467 0.89 -1.1 547,255 - -0.9 547,497 - +0.2 547,655 - +0.1 547,825 - +0.8 547,846 - -0.7 547,851 - -0.3 548,154 + DvMF_0468 0.48 -0.8 548,154 + DvMF_0468 0.48 -0.8 548,154 + DvMF_0468 0.48 +0.5 548,162 - DvMF_0468 0.51 +0.5 548,246 + DvMF_0468 0.74 -1.3 548,265 - DvMF_0468 0.79 -0.5 548,285 - DvMF_0468 0.85 +0.8 548,285 - DvMF_0468 0.85 -3.6 548,304 + -0.5 548,343 + -0.7
Or see this region's nucleotide sequence