Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0443 and DvMF_0444 are separated by 9 nucleotides DvMF_0444 and DvMF_0445 are separated by 180 nucleotides DvMF_0445 and DvMF_0446 are separated by 6 nucleotides
DvMF_0443: DvMF_0443 - hypothetical protein (RefSeq), at 519,728 to 520,174
_0443
DvMF_0444: DvMF_0444 - hypothetical protein (RefSeq), at 520,184 to 520,546
_0444
DvMF_0445: DvMF_0445 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 520,727 to 521,233
_0445
DvMF_0446: DvMF_0446 - putative glutamate synthase subunit beta (RefSeq), at 521,240 to 522,331
_0446
Position (kb) 520
521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 519.887 kb on - strand, within DvMF_0443 at 519.897 kb on - strand, within DvMF_0443 at 520.197 kb on - strand at 520.906 kb on + strand, within DvMF_0445 at 521.055 kb on - strand, within DvMF_0445 at 521.122 kb on - strand, within DvMF_0445 at 521.317 kb on - strand at 521.323 kb on + strand at 521.898 kb on + strand, within DvMF_0446 at 521.906 kb on - strand, within DvMF_0446 at 521.906 kb on - strand, within DvMF_0446 at 522.000 kb on - strand, within DvMF_0446 at 522.165 kb on - strand, within DvMF_0446 at 522.179 kb on - strand, within DvMF_0446
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 5 mM remove 519,887 - DvMF_0443 0.36 -0.3 519,897 - DvMF_0443 0.38 -0.5 520,197 - -1.1 520,906 + DvMF_0445 0.35 -2.3 521,055 - DvMF_0445 0.65 -2.6 521,122 - DvMF_0445 0.78 -1.3 521,317 - -0.2 521,323 + -2.2 521,898 + DvMF_0446 0.60 -2.0 521,906 - DvMF_0446 0.61 -2.7 521,906 - DvMF_0446 0.61 -1.3 522,000 - DvMF_0446 0.70 -3.9 522,165 - DvMF_0446 0.85 -2.8 522,179 - DvMF_0446 0.86 -3.0
Or see this region's nucleotide sequence