Experiment: MoYLS4 with 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0003 and DvMF_0004 are separated by 298 nucleotides DvMF_0004 and DvMF_0005 are separated by 92 nucleotides
DvMF_0003: DvMF_0003 - AMP-dependent synthetase and ligase (RefSeq), at 2,583 to 4,256
_0003
DvMF_0004: DvMF_0004 - protein of unknown function DUF181 (RefSeq), at 4,555 to 6,309
_0004
DvMF_0005: DvMF_0005 - methyltransferase small (RefSeq), at 6,402 to 7,196
_0005
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3.776 kb on + strand, within DvMF_0003 at 3.777 kb on + strand, within DvMF_0003 at 3.811 kb on + strand, within DvMF_0003 at 4.097 kb on + strand at 4.115 kb on - strand at 4.481 kb on - strand at 4.599 kb on + strand at 4.846 kb on - strand, within DvMF_0004 at 4.864 kb on - strand, within DvMF_0004 at 4.869 kb on - strand, within DvMF_0004 at 4.966 kb on + strand, within DvMF_0004 at 5.005 kb on - strand, within DvMF_0004 at 5.035 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.214 kb on + strand, within DvMF_0004 at 5.216 kb on + strand, within DvMF_0004 at 5.216 kb on + strand, within DvMF_0004 at 5.224 kb on - strand, within DvMF_0004 at 5.312 kb on + strand, within DvMF_0004 at 5.557 kb on + strand, within DvMF_0004 at 5.601 kb on - strand, within DvMF_0004 at 5.694 kb on - strand, within DvMF_0004 at 5.868 kb on + strand, within DvMF_0004 at 5.868 kb on + strand, within DvMF_0004 at 6.163 kb on + strand at 6.588 kb on - strand, within DvMF_0005 at 6.739 kb on - strand, within DvMF_0005 at 6.739 kb on - strand, within DvMF_0005 at 6.763 kb on + strand, within DvMF_0005 at 6.831 kb on - strand, within DvMF_0005 at 6.937 kb on + strand, within DvMF_0005 at 6.994 kb on + strand, within DvMF_0005 at 7.210 kb on - strand at 7.295 kb on + strand at 7.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 5 mM remove 3,776 + DvMF_0003 0.71 -0.3 3,777 + DvMF_0003 0.71 -0.3 3,811 + DvMF_0003 0.73 -0.2 4,097 + +1.1 4,115 - +0.9 4,481 - -0.6 4,599 + -1.9 4,846 - DvMF_0004 0.17 -1.2 4,864 - DvMF_0004 0.18 -4.0 4,869 - DvMF_0004 0.18 -1.6 4,966 + DvMF_0004 0.23 -2.4 5,005 - DvMF_0004 0.26 -2.8 5,035 - DvMF_0004 0.27 -2.6 5,054 - DvMF_0004 0.28 -1.9 5,054 - DvMF_0004 0.28 -2.5 5,054 - DvMF_0004 0.28 -1.2 5,054 - DvMF_0004 0.28 -3.2 5,214 + DvMF_0004 0.38 -2.0 5,216 + DvMF_0004 0.38 -1.2 5,216 + DvMF_0004 0.38 -2.2 5,224 - DvMF_0004 0.38 -3.6 5,312 + DvMF_0004 0.43 -3.2 5,557 + DvMF_0004 0.57 -3.8 5,601 - DvMF_0004 0.60 -2.8 5,694 - DvMF_0004 0.65 -2.8 5,868 + DvMF_0004 0.75 -2.3 5,868 + DvMF_0004 0.75 -3.3 6,163 + -2.2 6,588 - DvMF_0005 0.23 -0.8 6,739 - DvMF_0005 0.42 -0.7 6,739 - DvMF_0005 0.42 -0.4 6,763 + DvMF_0005 0.45 -0.6 6,831 - DvMF_0005 0.54 -0.8 6,937 + DvMF_0005 0.67 -0.9 6,994 + DvMF_0005 0.74 -0.6 7,210 - -0.4 7,295 + -0.4 7,295 + -0.6
Or see this region's nucleotide sequence