Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3815 and Dshi_3816 are separated by 2 nucleotides Dshi_3816 and Dshi_3817 are separated by 125 nucleotides
Dshi_3815: Dshi_3815 - monooxygenase FAD-binding (RefSeq), at 23,077 to 24,702
_3815
Dshi_3816: Dshi_3816 - hypothetical protein (RefSeq), at 24,705 to 24,890
_3816
Dshi_3817: Dshi_3817 - beta-ketoadipyl CoA thiolase (RefSeq), at 25,016 to 26,218
_3817
Position (kb) 24
25 Strain fitness (log2 ratio) -1
0
1 at 23.873 kb on - strand, within Dshi_3815 at 23.897 kb on - strand, within Dshi_3815 at 23.912 kb on + strand, within Dshi_3815 at 23.917 kb on + strand, within Dshi_3815 at 23.920 kb on - strand, within Dshi_3815 at 23.949 kb on - strand, within Dshi_3815 at 23.974 kb on - strand, within Dshi_3815 at 24.135 kb on - strand, within Dshi_3815 at 24.137 kb on - strand, within Dshi_3815 at 24.139 kb on + strand, within Dshi_3815 at 24.157 kb on - strand, within Dshi_3815 at 24.165 kb on + strand, within Dshi_3815 at 24.165 kb on + strand, within Dshi_3815 at 24.173 kb on - strand, within Dshi_3815 at 24.259 kb on + strand, within Dshi_3815 at 24.267 kb on - strand, within Dshi_3815 at 24.439 kb on - strand, within Dshi_3815 at 24.632 kb on - strand at 24.721 kb on - strand at 24.721 kb on - strand at 25.144 kb on + strand, within Dshi_3817 at 25.153 kb on - strand, within Dshi_3817 at 25.313 kb on - strand, within Dshi_3817 at 25.409 kb on + strand, within Dshi_3817 at 25.410 kb on + strand, within Dshi_3817 at 25.430 kb on + strand, within Dshi_3817 at 25.695 kb on - strand, within Dshi_3817
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 23,873 - Dshi_3815 0.49 +0.8 23,897 - Dshi_3815 0.50 -0.1 23,912 + Dshi_3815 0.51 +0.3 23,917 + Dshi_3815 0.52 +0.6 23,920 - Dshi_3815 0.52 -0.2 23,949 - Dshi_3815 0.54 +0.3 23,974 - Dshi_3815 0.55 +0.1 24,135 - Dshi_3815 0.65 +0.0 24,137 - Dshi_3815 0.65 -0.5 24,139 + Dshi_3815 0.65 -0.6 24,157 - Dshi_3815 0.66 -0.1 24,165 + Dshi_3815 0.67 -0.6 24,165 + Dshi_3815 0.67 -0.7 24,173 - Dshi_3815 0.67 +0.4 24,259 + Dshi_3815 0.73 -0.8 24,267 - Dshi_3815 0.73 -0.2 24,439 - Dshi_3815 0.84 -0.4 24,632 - -0.6 24,721 - +0.9 24,721 - -0.6 25,144 + Dshi_3817 0.11 -0.5 25,153 - Dshi_3817 0.11 -0.2 25,313 - Dshi_3817 0.25 -0.4 25,409 + Dshi_3817 0.33 +0.9 25,410 + Dshi_3817 0.33 -0.1 25,430 + Dshi_3817 0.34 +0.6 25,695 - Dshi_3817 0.56 -0.0
Or see this region's nucleotide sequence