Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3679

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3677 and Dshi_3678 are separated by 116 nucleotidesDshi_3678 and Dshi_3679 overlap by 4 nucleotidesDshi_3679 and Dshi_3680 are separated by 138 nucleotides Dshi_3677: Dshi_3677 - hypothetical protein (RefSeq), at 80,378 to 80,902 _3677 Dshi_3678: Dshi_3678 - ATP-binding protein (RefSeq), at 81,019 to 81,843 _3678 Dshi_3679: Dshi_3679 - Integrase catalytic region (RefSeq), at 81,840 to 83,333 _3679 Dshi_3680: Dshi_3680 - Resolvase domain (RefSeq), at 83,472 to 84,071 _3680 Position (kb) 81 82 83 84Strain fitness (log2 ratio) -1 0 1at 80.851 kb on + strandat 80.851 kb on - strandat 80.860 kb on + strandat 80.862 kb on + strandat 80.867 kb on + strandat 80.875 kb on - strandat 80.879 kb on + strandat 80.884 kb on + strandat 80.884 kb on + strandat 80.887 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.892 kb on - strandat 80.899 kb on + strandat 80.901 kb on + strandat 80.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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80,851 + -0.8
80,851 - +1.2
80,860 + +0.7
80,862 + -0.2
80,867 + -0.2
80,875 - -0.2
80,879 + -1.0
80,884 + +0.4
80,884 + -0.2
80,887 - -0.1
80,892 - -0.4
80,892 - -0.1
80,892 - -0.2
80,892 - +0.3
80,892 - +0.0
80,892 - +0.1
80,892 - -0.3
80,892 - +0.5
80,892 - -0.1
80,892 - -0.4
80,892 - -0.5
80,892 - +0.1
80,892 - -0.5
80,892 - -0.2
80,892 - -1.4
80,899 + -0.5
80,901 + -0.8
80,998 - -1.3

Or see this region's nucleotide sequence