Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0799

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0798 and Dshi_0799 are separated by 266 nucleotidesDshi_0799 and Dshi_0800 are separated by 162 nucleotidesDshi_0800 and Dshi_0801 are separated by 7 nucleotides Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613 _0798 Dshi_0799: Dshi_0799 - putative DNA-binding protein (RefSeq), at 805,880 to 806,218 _0799 Dshi_0800: Dshi_0800 - transcriptional regulator, IclR family (RefSeq), at 806,381 to 807,163 _0800 Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529 _0801 Position (kb) 805 806 807Strain fitness (log2 ratio) -3 -2 -1 0 1at 805.630 kb on + strandat 805.641 kb on + strandat 805.641 kb on + strandat 805.648 kb on + strandat 805.799 kb on + strandat 805.848 kb on - strandat 805.905 kb on + strandat 805.957 kb on - strand, within Dshi_0799at 805.993 kb on - strand, within Dshi_0799at 806.026 kb on + strand, within Dshi_0799at 806.034 kb on - strand, within Dshi_0799at 806.070 kb on + strand, within Dshi_0799at 806.125 kb on - strand, within Dshi_0799at 806.146 kb on + strand, within Dshi_0799at 806.184 kb on + strand, within Dshi_0799at 806.386 kb on - strandat 806.412 kb on - strandat 806.506 kb on + strand, within Dshi_0800at 806.629 kb on + strand, within Dshi_0800at 806.669 kb on - strand, within Dshi_0800at 806.703 kb on + strand, within Dshi_0800at 806.714 kb on + strand, within Dshi_0800at 806.721 kb on - strand, within Dshi_0800at 806.758 kb on + strand, within Dshi_0800at 806.804 kb on - strand, within Dshi_0800at 806.852 kb on - strand, within Dshi_0800at 806.982 kb on - strand, within Dshi_0800at 806.982 kb on - strand, within Dshi_0800at 806.989 kb on - strand, within Dshi_0800at 807.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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805,630 + -0.4
805,641 + -0.3
805,641 + +0.5
805,648 + -0.5
805,799 + +0.3
805,848 - -0.3
805,905 + -0.8
805,957 - Dshi_0799 0.23 +0.6
805,993 - Dshi_0799 0.33 -0.4
806,026 + Dshi_0799 0.43 -2.8
806,034 - Dshi_0799 0.45 -0.4
806,070 + Dshi_0799 0.56 -0.1
806,125 - Dshi_0799 0.72 +0.0
806,146 + Dshi_0799 0.78 -1.2
806,184 + Dshi_0799 0.90 -1.8
806,386 - +0.2
806,412 - +0.4
806,506 + Dshi_0800 0.16 -0.2
806,629 + Dshi_0800 0.32 -0.9
806,669 - Dshi_0800 0.37 -1.5
806,703 + Dshi_0800 0.41 +0.5
806,714 + Dshi_0800 0.43 +0.5
806,721 - Dshi_0800 0.43 -0.6
806,758 + Dshi_0800 0.48 +0.0
806,804 - Dshi_0800 0.54 +0.4
806,852 - Dshi_0800 0.60 -0.5
806,982 - Dshi_0800 0.77 -1.1
806,982 - Dshi_0800 0.77 +0.4
806,989 - Dshi_0800 0.78 -1.0
807,169 + -0.1

Or see this region's nucleotide sequence