Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0766 and Dshi_0767 are separated by 1 nucleotides Dshi_0767 and Dshi_0768 are separated by 176 nucleotides Dshi_0768 and Dshi_0769 are separated by 87 nucleotides Dshi_0769 and Dshi_0770 are separated by 220 nucleotides Dshi_0770 and Dshi_0771 overlap by 43 nucleotides
Dshi_0766: Dshi_0766 - protein of unknown function DUF1194 (RefSeq), at 773,856 to 774,593
_0766
Dshi_0767: Dshi_0767 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 774,595 to 775,023
_0767
Dshi_0768: Dshi_0768 - thymidylate synthase, flavin-dependent (RefSeq), at 775,200 to 776,117
_0768
Dshi_0769: Dshi_0769 - cold-shock DNA-binding domain protein (RefSeq), at 776,205 to 776,414
_0769
Dshi_0770: Dshi_0770 - arsenate reductase and related (RefSeq), at 776,635 to 776,946
_0770
Dshi_0771: Dshi_0771 - DoxX family protein (RefSeq), at 776,904 to 777,470
_0771
Position (kb) 775
776
777 Strain fitness (log2 ratio) -2
-1
0
1 at 774.254 kb on + strand, within Dshi_0766 at 774.303 kb on + strand, within Dshi_0766 at 774.531 kb on - strand at 774.537 kb on - strand at 774.539 kb on + strand at 774.539 kb on + strand at 774.542 kb on - strand at 774.542 kb on - strand at 774.542 kb on - strand at 774.575 kb on + strand at 774.646 kb on + strand, within Dshi_0767 at 774.679 kb on + strand, within Dshi_0767 at 774.882 kb on - strand, within Dshi_0767 at 774.911 kb on - strand, within Dshi_0767 at 774.950 kb on - strand, within Dshi_0767 at 774.979 kb on + strand, within Dshi_0767 at 775.065 kb on + strand at 776.162 kb on + strand at 776.216 kb on - strand at 776.243 kb on + strand, within Dshi_0769 at 776.244 kb on + strand, within Dshi_0769 at 776.409 kb on - strand at 776.498 kb on + strand at 776.535 kb on + strand at 776.578 kb on + strand at 776.593 kb on + strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.611 kb on - strand at 776.628 kb on + strand at 776.813 kb on + strand, within Dshi_0770 at 776.920 kb on - strand at 776.932 kb on - strand at 776.992 kb on + strand, within Dshi_0771 at 776.995 kb on - strand, within Dshi_0771
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 774,254 + Dshi_0766 0.54 -0.1 774,303 + Dshi_0766 0.61 +0.2 774,531 - -0.2 774,537 - +0.3 774,539 + -0.3 774,539 + -0.8 774,542 - -1.0 774,542 - -0.0 774,542 - -0.0 774,575 + +1.2 774,646 + Dshi_0767 0.12 -0.8 774,679 + Dshi_0767 0.20 -0.1 774,882 - Dshi_0767 0.67 -1.0 774,911 - Dshi_0767 0.74 +0.5 774,950 - Dshi_0767 0.83 -0.4 774,979 + Dshi_0767 0.90 -0.2 775,065 + -0.1 776,162 + -0.4 776,216 - -0.7 776,243 + Dshi_0769 0.18 +0.5 776,244 + Dshi_0769 0.19 +0.8 776,409 - +0.3 776,498 + -1.4 776,535 + -0.3 776,578 + -2.1 776,593 + -0.1 776,601 - +0.7 776,601 - -0.0 776,601 - +0.0 776,601 - -0.4 776,601 - +0.6 776,611 - -0.9 776,628 + +0.5 776,813 + Dshi_0770 0.57 +0.9 776,920 - +0.9 776,932 - -0.1 776,992 + Dshi_0771 0.16 +1.2 776,995 - Dshi_0771 0.16 -0.4
Or see this region's nucleotide sequence