Experiment: MoYLS4 no iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0109 and DVUA0110 overlap by 4 nucleotides DVUA0110 and DVUA0111 overlap by 52 nucleotides DVUA0111 and DVUA0111.1 are separated by 52 nucleotides DVUA0111.1 and DVUA0112 are separated by 302 nucleotides
DVUA0109: DVUA0109 - type III secretion system chaperone, LcrH/SycD family (TIGR), at 146,209 to 146,709
DVUA0109
DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713
DVUA0110
DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558
DVUA0111
DVUA0111.1: DVUA0111.1 - SEED: Tir chaperone family protein, at 148,611 to 149,066
DVUA0111.1
DVUA0112: DVUA0112 - type III secretion system protein, YscC family (TIGR), at 149,369 to 151,243
DVUA0112
Position (kb) 147
148
149 Strain fitness (log2 ratio) -1
0
1 at 146.674 kb on - strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.808 kb on + strand, within DVUA0110 at 146.815 kb on - strand, within DVUA0110 at 146.856 kb on + strand, within DVUA0110 at 146.892 kb on + strand, within DVUA0110 at 146.962 kb on - strand, within DVUA0110 at 147.177 kb on + strand, within DVUA0110 at 147.185 kb on - strand, within DVUA0110 at 147.208 kb on - strand, within DVUA0110 at 147.244 kb on - strand, within DVUA0110 at 147.257 kb on + strand, within DVUA0110 at 147.290 kb on - strand, within DVUA0110 at 147.320 kb on - strand, within DVUA0110 at 147.336 kb on - strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.391 kb on - strand, within DVUA0110 at 147.416 kb on - strand, within DVUA0110 at 147.444 kb on - strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.672 kb on - strand at 147.679 kb on + strand at 147.689 kb on - strand at 147.849 kb on - strand, within DVUA0111 at 147.960 kb on - strand, within DVUA0111 at 147.975 kb on + strand, within DVUA0111 at 148.051 kb on + strand, within DVUA0111 at 148.057 kb on + strand, within DVUA0111 at 148.118 kb on - strand, within DVUA0111 at 148.140 kb on - strand, within DVUA0111 at 148.144 kb on + strand, within DVUA0111 at 148.209 kb on - strand, within DVUA0111 at 148.210 kb on - strand, within DVUA0111 at 148.297 kb on - strand, within DVUA0111 at 148.307 kb on + strand, within DVUA0111 at 148.350 kb on + strand, within DVUA0111 at 148.429 kb on + strand, within DVUA0111 at 148.482 kb on - strand at 148.537 kb on - strand at 148.577 kb on + strand at 148.738 kb on - strand, within DVUA0111.1 at 148.918 kb on + strand, within DVUA0111.1 at 148.941 kb on + strand, within DVUA0111.1 at 149.001 kb on + strand, within DVUA0111.1 at 149.014 kb on - strand, within DVUA0111.1 at 149.328 kb on - strand at 149.389 kb on + strand at 149.413 kb on - strand at 149.432 kb on - strand at 149.444 kb on - strand at 149.484 kb on + strand at 149.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron remove 146,674 - -0.1 146,767 + -0.3 146,767 + +0.3 146,767 + -0.0 146,808 + DVUA0110 0.10 -0.2 146,815 - DVUA0110 0.11 -0.6 146,856 + DVUA0110 0.15 +0.2 146,892 + DVUA0110 0.18 -0.3 146,962 - DVUA0110 0.25 +1.3 147,177 + DVUA0110 0.47 -0.3 147,185 - DVUA0110 0.48 -0.0 147,208 - DVUA0110 0.50 -0.1 147,244 - DVUA0110 0.53 -0.2 147,257 + DVUA0110 0.55 +1.2 147,290 - DVUA0110 0.58 -0.1 147,320 - DVUA0110 0.61 +0.0 147,336 - DVUA0110 0.62 -0.2 147,383 + DVUA0110 0.67 +0.3 147,383 + DVUA0110 0.67 +0.0 147,391 - DVUA0110 0.68 -0.1 147,416 - DVUA0110 0.70 +0.1 147,444 - DVUA0110 0.73 -0.5 147,471 + DVUA0110 0.76 -0.4 147,471 + DVUA0110 0.76 -0.2 147,476 + DVUA0110 0.76 -0.6 147,476 + DVUA0110 0.76 -0.2 147,672 - +1.0 147,679 + +0.8 147,689 - -0.1 147,849 - DVUA0111 0.21 -0.4 147,960 - DVUA0111 0.33 -0.7 147,975 + DVUA0111 0.35 -0.1 148,051 + DVUA0111 0.43 -0.6 148,057 + DVUA0111 0.44 -1.3 148,118 - DVUA0111 0.51 -0.8 148,140 - DVUA0111 0.53 -1.2 148,144 + DVUA0111 0.54 -0.2 148,209 - DVUA0111 0.61 -1.7 148,210 - DVUA0111 0.61 -0.1 148,297 - DVUA0111 0.71 -0.6 148,307 + DVUA0111 0.72 -0.0 148,350 + DVUA0111 0.77 +0.0 148,429 + DVUA0111 0.86 -0.1 148,482 - +0.3 148,537 - -0.5 148,577 + -0.1 148,738 - DVUA0111.1 0.28 +0.1 148,918 + DVUA0111.1 0.67 -1.0 148,941 + DVUA0111.1 0.72 -0.6 149,001 + DVUA0111.1 0.86 +0.1 149,014 - DVUA0111.1 0.88 -0.3 149,328 - +0.7 149,389 + -0.4 149,413 - -0.0 149,432 - -1.1 149,444 - -0.1 149,484 + -0.1 149,546 - +0.1
Or see this region's nucleotide sequence