Experiment: MoYLS4 no iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsK and lolA are separated by 17 nucleotides lolA and rluB are separated by 179 nucleotides rluB and DVU1670 overlap by 4 nucleotides DVU1670 and msbA are separated by 111 nucleotides
DVU1667: ftsK - FtsK/SpoIIIE family protein (TIGR), at 1,745,901 to 1,748,231
ftsK
DVU1668: lolA - outer membrane lipoprotein carrier protein, putative (TIGR), at 1,748,249 to 1,748,926
lolA
DVU1669: rluB - ribosomal large subunit pseudouridine synthase B (TIGR), at 1,749,106 to 1,749,984
rluB
DVU1670: DVU1670 - conserved hypothetical protein (TIGR), at 1,749,981 to 1,750,619
DVU1670
DVU1671: msbA - ABC transporter, ATP-binding protein/permease protein (TIGR), at 1,750,731 to 1,752,536
msbA
Position (kb)
1749
1750 Strain fitness (log2 ratio)
-1
0
1 at 1749.104 kb on + strand at 1749.104 kb on + strand at 1749.104 kb on + strand at 1749.104 kb on + strand at 1749.112 kb on - strand at 1749.228 kb on + strand, within rluB at 1749.326 kb on + strand, within rluB at 1749.368 kb on - strand, within rluB at 1749.468 kb on - strand, within rluB at 1749.536 kb on + strand, within rluB at 1749.947 kb on - strand at 1749.967 kb on - strand at 1750.197 kb on + strand, within DVU1670 at 1750.271 kb on + strand, within DVU1670 at 1750.419 kb on - strand, within DVU1670 at 1750.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron remove 1,749,104 + -0.1 1,749,104 + +0.7 1,749,104 + -1.1 1,749,104 + -0.0 1,749,112 - -0.1 1,749,228 + rluB DVU1669 0.14 -0.5 1,749,326 + rluB DVU1669 0.25 -0.8 1,749,368 - rluB DVU1669 0.30 -0.3 1,749,468 - rluB DVU1669 0.41 -0.8 1,749,536 + rluB DVU1669 0.49 +1.0 1,749,947 - -0.5 1,749,967 - -0.3 1,750,197 + DVU1670 0.34 +0.1 1,750,271 + DVU1670 0.45 -0.3 1,750,419 - DVU1670 0.69 -0.1 1,750,571 - -0.3
Or see this region's nucleotide sequence