Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26655 and PFLU_RS26660 are separated by 15 nucleotides PFLU_RS26660 and PFLU_RS26665 are separated by 9 nucleotides PFLU_RS26665 and PFLU_RS26670 are separated by 69 nucleotides
PFLU_RS26655: PFLU_RS26655 - penicillin-binding protein 2, at 5,956,957 to 5,958,855
_RS26655
PFLU_RS26660: PFLU_RS26660 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 5,958,871 to 5,959,338
_RS26660
PFLU_RS26665: PFLU_RS26665 - ribosome silencing factor, at 5,959,348 to 5,959,842
_RS26665
PFLU_RS26670: PFLU_RS26670 - nicotinate-nucleotide adenylyltransferase, at 5,959,912 to 5,960,556
_RS26670
Position (kb) 5958
5959
5960 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5958.873 kb on - strand at 5958.873 kb on - strand at 5958.873 kb on - strand at 5958.873 kb on - strand at 5958.873 kb on - strand at 5958.882 kb on - strand at 5958.882 kb on - strand at 5958.914 kb on + strand at 5958.914 kb on + strand at 5958.915 kb on - strand at 5958.915 kb on - strand at 5958.915 kb on - strand at 5958.915 kb on - strand at 5958.915 kb on - strand at 5958.915 kb on - strand at 5958.940 kb on + strand, within PFLU_RS26660 at 5958.940 kb on + strand, within PFLU_RS26660 at 5958.941 kb on - strand, within PFLU_RS26660 at 5958.941 kb on - strand, within PFLU_RS26660 at 5959.225 kb on + strand, within PFLU_RS26660 at 5959.226 kb on - strand, within PFLU_RS26660 at 5959.272 kb on - strand, within PFLU_RS26660 at 5959.272 kb on - strand, within PFLU_RS26660 at 5959.272 kb on - strand, within PFLU_RS26660 at 5959.350 kb on - strand at 5959.350 kb on - strand at 5959.464 kb on - strand, within PFLU_RS26665 at 5959.845 kb on - strand at 5959.845 kb on - strand at 5959.845 kb on - strand at 5959.845 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.863 kb on - strand at 5959.882 kb on - strand at 5959.893 kb on + strand at 5959.893 kb on + strand at 5959.893 kb on + strand at 5959.893 kb on + strand at 5959.894 kb on - strand at 5959.894 kb on - strand at 5959.894 kb on - strand at 5959.894 kb on - strand at 5959.894 kb on - strand at 5959.894 kb on - strand at 5959.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,958,873 - -2.2 5,958,873 - +0.1 5,958,873 - -0.2 5,958,873 - +0.6 5,958,873 - +0.1 5,958,882 - -1.5 5,958,882 - -0.4 5,958,914 + -0.4 5,958,914 + +1.4 5,958,915 - -1.5 5,958,915 - -1.6 5,958,915 - -0.7 5,958,915 - +1.0 5,958,915 - -0.9 5,958,915 - -0.5 5,958,940 + PFLU_RS26660 0.15 -0.5 5,958,940 + PFLU_RS26660 0.15 -1.5 5,958,941 - PFLU_RS26660 0.15 -1.5 5,958,941 - PFLU_RS26660 0.15 -1.4 5,959,225 + PFLU_RS26660 0.76 +0.1 5,959,226 - PFLU_RS26660 0.76 -1.4 5,959,272 - PFLU_RS26660 0.86 -1.5 5,959,272 - PFLU_RS26660 0.86 +1.1 5,959,272 - PFLU_RS26660 0.86 -0.7 5,959,350 - +2.1 5,959,350 - +0.5 5,959,464 - PFLU_RS26665 0.23 +1.1 5,959,845 - -0.2 5,959,845 - +1.5 5,959,845 - -1.4 5,959,845 - +0.1 5,959,863 - -1.8 5,959,863 - -0.6 5,959,863 - +1.6 5,959,863 - +0.2 5,959,863 - -2.2 5,959,863 - -1.0 5,959,863 - -0.4 5,959,863 - -0.1 5,959,863 - -0.7 5,959,863 - -1.9 5,959,882 - -1.5 5,959,893 + +3.4 5,959,893 + -0.2 5,959,893 + +1.1 5,959,893 + +0.5 5,959,894 - -1.1 5,959,894 - -1.8 5,959,894 - -1.0 5,959,894 - -0.7 5,959,894 - +2.1 5,959,894 - -0.2 5,959,894 - -0.2
Or see this region's nucleotide sequence