Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01695

Experiment: H2 deepwell autotrophic conditions

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01690 and MMP_RS01695 are separated by 367 nucleotidesMMP_RS01695 and MMP_RS01700 are separated by 91 nucleotides MMP_RS01690: MMP_RS01690 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 310,758 to 312,596 _RS01690 MMP_RS01695: MMP_RS01695 - fructose-1 6-bisphosphatase, at 312,964 to 314,115 _RS01695 MMP_RS01700: MMP_RS01700 - dihydroxy-acid dehydratase, at 314,207 to 315,859 _RS01700 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 312.075 kb on - strand, within MMP_RS01690at 312.107 kb on - strand, within MMP_RS01690at 312.313 kb on - strand, within MMP_RS01690at 312.313 kb on - strand, within MMP_RS01690at 312.313 kb on - strand, within MMP_RS01690at 312.314 kb on + strand, within MMP_RS01690at 312.370 kb on + strand, within MMP_RS01690at 312.455 kb on - strandat 312.609 kb on - strandat 312.613 kb on + strandat 312.671 kb on + strandat 312.671 kb on + strandat 312.672 kb on - strandat 312.673 kb on + strandat 312.673 kb on + strandat 312.674 kb on - strandat 312.674 kb on - strandat 312.680 kb on + strandat 312.711 kb on + strandat 312.776 kb on + strandat 312.786 kb on + strandat 312.790 kb on - strandat 312.819 kb on - strandat 312.823 kb on - strandat 312.842 kb on - strandat 312.843 kb on + strandat 312.843 kb on + strandat 312.843 kb on + strandat 312.895 kb on + strandat 312.912 kb on - strandat 312.912 kb on - strandat 312.918 kb on - strandat 312.984 kb on + strandat 313.029 kb on + strandat 313.435 kb on - strandat 313.525 kb on - strandat 314.197 kb on - strandat 314.198 kb on + strandat 314.202 kb on - strandat 314.208 kb on - strandat 314.208 kb on - strandat 314.333 kb on - strandat 314.857 kb on - strand, within MMP_RS01700

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell autotrophic conditions
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312,075 - MMP_RS01690 0.72 +1.1
312,107 - MMP_RS01690 0.73 +1.1
312,313 - MMP_RS01690 0.85 +1.3
312,313 - MMP_RS01690 0.85 +1.3
312,313 - MMP_RS01690 0.85 +1.1
312,314 + MMP_RS01690 0.85 +0.5
312,370 + MMP_RS01690 0.88 +0.0
312,455 - +0.3
312,609 - +1.0
312,613 + -0.0
312,671 + +0.2
312,671 + -1.8
312,672 - +1.3
312,673 + +0.0
312,673 + +0.4
312,674 - -0.7
312,674 - -0.7
312,680 + -0.4
312,711 + +0.7
312,776 + +0.9
312,786 + +1.4
312,790 - +0.8
312,819 - +1.7
312,823 - +0.5
312,842 - -0.4
312,843 + -1.3
312,843 + -0.2
312,843 + +1.4
312,895 + -3.4
312,912 - -1.3
312,912 - -2.2
312,918 - -3.0
312,984 + -1.9
313,029 + -3.3
313,435 - -2.2
313,525 - -3.3
314,197 - +0.5
314,198 + -1.1
314,202 - +0.4
314,208 - +2.4
314,208 - -0.1
314,333 - -3.1
314,857 - MMP_RS01700 0.39 -3.1

Or see this region's nucleotide sequence