Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05250

Experiment: R2A with Cesium chloride 3.90625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05245 and LRK54_RS05250 are separated by 119 nucleotidesLRK54_RS05250 and LRK54_RS05255 are separated by 75 nucleotides LRK54_RS05245: LRK54_RS05245 - GTP-binding protein, at 1,124,140 to 1,125,498 _RS05245 LRK54_RS05250: LRK54_RS05250 - glutaredoxin family protein, at 1,125,618 to 1,125,848 _RS05250 LRK54_RS05255: LRK54_RS05255 - L-serine ammonia-lyase, at 1,125,924 to 1,127,306 _RS05255 Position (kb) 1125 1126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.145 kb on + strand, within LRK54_RS05245at 1125.146 kb on - strand, within LRK54_RS05245at 1125.323 kb on - strand, within LRK54_RS05245at 1125.357 kb on + strand, within LRK54_RS05245at 1125.358 kb on + strand, within LRK54_RS05245at 1125.358 kb on + strand, within LRK54_RS05245at 1125.359 kb on - strand, within LRK54_RS05245at 1125.359 kb on - strand, within LRK54_RS05245at 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.496 kb on + strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.497 kb on - strandat 1125.501 kb on - strandat 1125.533 kb on + strandat 1125.533 kb on + strandat 1125.533 kb on + strandat 1125.534 kb on - strandat 1125.534 kb on - strandat 1125.534 kb on - strandat 1125.534 kb on - strandat 1125.544 kb on - strandat 1125.817 kb on + strand, within LRK54_RS05250at 1125.817 kb on + strand, within LRK54_RS05250at 1125.817 kb on + strand, within LRK54_RS05250at 1125.817 kb on + strand, within LRK54_RS05250at 1125.817 kb on + strand, within LRK54_RS05250at 1125.817 kb on + strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.818 kb on - strand, within LRK54_RS05250at 1125.830 kb on - strandat 1125.887 kb on + strandat 1125.887 kb on + strandat 1125.888 kb on - strandat 1125.888 kb on - strandat 1125.892 kb on + strandat 1125.937 kb on + strandat 1125.937 kb on + strandat 1125.937 kb on + strandat 1125.937 kb on + strandat 1125.937 kb on + strandat 1125.937 kb on + strandat 1125.938 kb on - strandat 1125.938 kb on - strandat 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.077 kb on + strand, within LRK54_RS05255at 1126.078 kb on - strand, within LRK54_RS05255at 1126.078 kb on - strand, within LRK54_RS05255at 1126.078 kb on - strand, within LRK54_RS05255at 1126.078 kb on - strand, within LRK54_RS05255at 1126.078 kb on - strand, within LRK54_RS05255at 1126.157 kb on + strand, within LRK54_RS05255at 1126.324 kb on - strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.359 kb on + strand, within LRK54_RS05255at 1126.360 kb on - strand, within LRK54_RS05255at 1126.360 kb on - strand, within LRK54_RS05255at 1126.360 kb on - strand, within LRK54_RS05255at 1126.360 kb on - strand, within LRK54_RS05255at 1126.360 kb on - strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.362 kb on + strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.363 kb on - strand, within LRK54_RS05255at 1126.741 kb on - strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.836 kb on + strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.837 kb on - strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.839 kb on + strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255at 1126.840 kb on - strand, within LRK54_RS05255

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cesium chloride 3.90625 mM
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1,125,037 + LRK54_RS05245 0.66 +0.1
1,125,037 + LRK54_RS05245 0.66 -0.0
1,125,037 + LRK54_RS05245 0.66 +0.1
1,125,037 + LRK54_RS05245 0.66 +0.3
1,125,037 + LRK54_RS05245 0.66 +0.3
1,125,037 + LRK54_RS05245 0.66 -0.7
1,125,037 + LRK54_RS05245 0.66 -0.9
1,125,037 + LRK54_RS05245 0.66 +1.4
1,125,037 + LRK54_RS05245 0.66 +0.1
1,125,037 + LRK54_RS05245 0.66 +0.6
1,125,037 + LRK54_RS05245 0.66 +0.3
1,125,037 + LRK54_RS05245 0.66 +0.2
1,125,037 + LRK54_RS05245 0.66 +0.5
1,125,037 + LRK54_RS05245 0.66 -0.4
1,125,037 + LRK54_RS05245 0.66 +0.9
1,125,037 + LRK54_RS05245 0.66 +0.9
1,125,037 + LRK54_RS05245 0.66 -0.0
1,125,037 + LRK54_RS05245 0.66 +1.1
1,125,037 + LRK54_RS05245 0.66 -0.3
1,125,037 + LRK54_RS05245 0.66 -0.7
1,125,037 + LRK54_RS05245 0.66 +0.3
1,125,038 - LRK54_RS05245 0.66 +0.1
1,125,038 - LRK54_RS05245 0.66 +1.2
1,125,038 - LRK54_RS05245 0.66 -0.7
1,125,038 - LRK54_RS05245 0.66 -0.2
1,125,038 - LRK54_RS05245 0.66 +0.6
1,125,038 - LRK54_RS05245 0.66 -0.6
1,125,038 - LRK54_RS05245 0.66 -0.2
1,125,038 - LRK54_RS05245 0.66 +0.7
1,125,038 - LRK54_RS05245 0.66 +0.6
1,125,038 - LRK54_RS05245 0.66 +0.5
1,125,038 - LRK54_RS05245 0.66 +0.3
1,125,038 - LRK54_RS05245 0.66 -0.1
1,125,038 - LRK54_RS05245 0.66 -0.4
1,125,145 + LRK54_RS05245 0.74 +0.5
1,125,146 - LRK54_RS05245 0.74 +0.3
1,125,323 - LRK54_RS05245 0.87 -0.1
1,125,357 + LRK54_RS05245 0.90 +1.3
1,125,358 + LRK54_RS05245 0.90 -1.1
1,125,358 + LRK54_RS05245 0.90 -0.7
1,125,359 - LRK54_RS05245 0.90 -0.4
1,125,359 - LRK54_RS05245 0.90 +1.7
1,125,496 + -0.1
1,125,496 + +1.9
1,125,496 + +0.1
1,125,496 + -0.7
1,125,496 + +1.4
1,125,496 + +1.5
1,125,496 + -0.4
1,125,496 + +0.5
1,125,496 + +0.5
1,125,496 + -0.9
1,125,496 + +0.4
1,125,497 - +0.5
1,125,497 - -1.4
1,125,497 - +1.9
1,125,497 - -0.4
1,125,497 - -1.1
1,125,497 - +0.3
1,125,497 - -0.1
1,125,501 - +0.9
1,125,533 + -0.0
1,125,533 + +0.5
1,125,533 + +0.8
1,125,534 - -0.1
1,125,534 - -0.1
1,125,534 - +1.3
1,125,534 - +0.0
1,125,544 - +0.0
1,125,817 + LRK54_RS05250 0.86 -0.3
1,125,817 + LRK54_RS05250 0.86 -1.5
1,125,817 + LRK54_RS05250 0.86 -3.1
1,125,817 + LRK54_RS05250 0.86 -2.2
1,125,817 + LRK54_RS05250 0.86 -1.5
1,125,817 + LRK54_RS05250 0.86 -1.1
1,125,818 - LRK54_RS05250 0.87 -1.9
1,125,818 - LRK54_RS05250 0.87 -3.2
1,125,818 - LRK54_RS05250 0.87 -3.7
1,125,818 - LRK54_RS05250 0.87 -0.2
1,125,818 - LRK54_RS05250 0.87 -1.0
1,125,818 - LRK54_RS05250 0.87 +1.9
1,125,830 - -2.4
1,125,887 + +0.3
1,125,887 + +0.6
1,125,888 - -0.3
1,125,888 - +0.4
1,125,892 + -0.3
1,125,937 + -3.8
1,125,937 + +0.3
1,125,937 + -3.6
1,125,937 + -1.7
1,125,937 + -2.6
1,125,937 + -1.1
1,125,938 - -1.1
1,125,938 - -1.4
1,126,077 + LRK54_RS05255 0.11 -1.1
1,126,077 + LRK54_RS05255 0.11 +0.3
1,126,077 + LRK54_RS05255 0.11 -2.8
1,126,077 + LRK54_RS05255 0.11 -0.4
1,126,077 + LRK54_RS05255 0.11 +1.9
1,126,077 + LRK54_RS05255 0.11 -0.5
1,126,077 + LRK54_RS05255 0.11 -1.7
1,126,078 - LRK54_RS05255 0.11 -1.5
1,126,078 - LRK54_RS05255 0.11 -0.4
1,126,078 - LRK54_RS05255 0.11 -1.6
1,126,078 - LRK54_RS05255 0.11 -0.9
1,126,078 - LRK54_RS05255 0.11 +0.9
1,126,157 + LRK54_RS05255 0.17 -2.7
1,126,324 - LRK54_RS05255 0.29 -1.0
1,126,359 + LRK54_RS05255 0.31 +1.9
1,126,359 + LRK54_RS05255 0.31 +1.9
1,126,359 + LRK54_RS05255 0.31 -1.0
1,126,359 + LRK54_RS05255 0.31 +0.1
1,126,359 + LRK54_RS05255 0.31 -2.7
1,126,359 + LRK54_RS05255 0.31 -0.4
1,126,359 + LRK54_RS05255 0.31 -1.7
1,126,359 + LRK54_RS05255 0.31 -2.9
1,126,359 + LRK54_RS05255 0.31 -0.2
1,126,360 - LRK54_RS05255 0.32 -2.9
1,126,360 - LRK54_RS05255 0.32 -1.7
1,126,360 - LRK54_RS05255 0.32 -1.4
1,126,360 - LRK54_RS05255 0.32 -3.0
1,126,360 - LRK54_RS05255 0.32 -3.0
1,126,362 + LRK54_RS05255 0.32 -2.0
1,126,362 + LRK54_RS05255 0.32 -1.0
1,126,362 + LRK54_RS05255 0.32 -0.4
1,126,362 + LRK54_RS05255 0.32 -1.6
1,126,362 + LRK54_RS05255 0.32 +0.3
1,126,362 + LRK54_RS05255 0.32 -1.1
1,126,362 + LRK54_RS05255 0.32 -1.7
1,126,362 + LRK54_RS05255 0.32 -3.1
1,126,362 + LRK54_RS05255 0.32 -0.1
1,126,362 + LRK54_RS05255 0.32 -0.9
1,126,362 + LRK54_RS05255 0.32 -2.0
1,126,362 + LRK54_RS05255 0.32 -0.3
1,126,362 + LRK54_RS05255 0.32 -1.1
1,126,362 + LRK54_RS05255 0.32 -0.7
1,126,362 + LRK54_RS05255 0.32 -1.7
1,126,363 - LRK54_RS05255 0.32 -1.2
1,126,363 - LRK54_RS05255 0.32 -1.4
1,126,363 - LRK54_RS05255 0.32 -0.9
1,126,363 - LRK54_RS05255 0.32 -1.3
1,126,363 - LRK54_RS05255 0.32 -0.4
1,126,363 - LRK54_RS05255 0.32 +0.4
1,126,741 - LRK54_RS05255 0.59 -2.4
1,126,836 + LRK54_RS05255 0.66 -1.7
1,126,836 + LRK54_RS05255 0.66 +0.6
1,126,836 + LRK54_RS05255 0.66 +0.4
1,126,836 + LRK54_RS05255 0.66 -2.2
1,126,836 + LRK54_RS05255 0.66 -1.4
1,126,836 + LRK54_RS05255 0.66 -1.9
1,126,836 + LRK54_RS05255 0.66 -1.9
1,126,836 + LRK54_RS05255 0.66 +1.1
1,126,836 + LRK54_RS05255 0.66 -1.8
1,126,836 + LRK54_RS05255 0.66 -0.8
1,126,837 - LRK54_RS05255 0.66 -0.1
1,126,837 - LRK54_RS05255 0.66 -0.3
1,126,837 - LRK54_RS05255 0.66 -1.7
1,126,837 - LRK54_RS05255 0.66 -0.4
1,126,837 - LRK54_RS05255 0.66 +0.9
1,126,837 - LRK54_RS05255 0.66 -2.4
1,126,837 - LRK54_RS05255 0.66 -2.8
1,126,837 - LRK54_RS05255 0.66 -0.1
1,126,837 - LRK54_RS05255 0.66 -2.2
1,126,839 + LRK54_RS05255 0.66 -1.7
1,126,839 + LRK54_RS05255 0.66 -0.5
1,126,839 + LRK54_RS05255 0.66 +0.5
1,126,839 + LRK54_RS05255 0.66 -0.3
1,126,839 + LRK54_RS05255 0.66 +1.3
1,126,839 + LRK54_RS05255 0.66 -1.9
1,126,839 + LRK54_RS05255 0.66 -0.1
1,126,839 + LRK54_RS05255 0.66 -0.4
1,126,839 + LRK54_RS05255 0.66 -0.4
1,126,839 + LRK54_RS05255 0.66 +0.5
1,126,839 + LRK54_RS05255 0.66 -1.9
1,126,839 + LRK54_RS05255 0.66 +0.6
1,126,839 + LRK54_RS05255 0.66 -2.1
1,126,840 - LRK54_RS05255 0.66 -1.1
1,126,840 - LRK54_RS05255 0.66 +1.1
1,126,840 - LRK54_RS05255 0.66 -0.9
1,126,840 - LRK54_RS05255 0.66 -0.1
1,126,840 - LRK54_RS05255 0.66 -1.4
1,126,840 - LRK54_RS05255 0.66 -2.0
1,126,840 - LRK54_RS05255 0.66 -0.2
1,126,840 - LRK54_RS05255 0.66 +0.9
1,126,840 - LRK54_RS05255 0.66 -0.7
1,126,840 - LRK54_RS05255 0.66 +1.3
1,126,840 - LRK54_RS05255 0.66 -0.4
1,126,840 - LRK54_RS05255 0.66 -1.5
1,126,840 - LRK54_RS05255 0.66 -0.9

Or see this region's nucleotide sequence