Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23825 and HSERO_RS23830 are separated by 128 nucleotides HSERO_RS23830 and HSERO_RS23835 are separated by 62 nucleotides HSERO_RS23835 and HSERO_RS23840 are separated by 75 nucleotides
HSERO_RS23825: HSERO_RS23825 - hypothetical protein, at 5,459,632 to 5,461,509
_RS23825
HSERO_RS23830: HSERO_RS23830 - transcriptional regulator, at 5,461,638 to 5,462,342
_RS23830
HSERO_RS23835: HSERO_RS23835 - transporter, at 5,462,405 to 5,463,340
_RS23835
HSERO_RS23840: HSERO_RS23840 - hypothetical protein, at 5,463,416 to 5,466,262
_RS23840
Position (kb) 5462
5463
5464 Strain fitness (log2 ratio) -1
0
1 at 5461.486 kb on - strand at 5461.555 kb on + strand at 5461.662 kb on - strand at 5461.892 kb on + strand, within HSERO_RS23830 at 5461.935 kb on - strand, within HSERO_RS23830 at 5462.101 kb on - strand, within HSERO_RS23830 at 5462.169 kb on - strand, within HSERO_RS23830 at 5462.343 kb on + strand at 5462.393 kb on - strand at 5462.400 kb on + strand at 5462.461 kb on + strand at 5462.504 kb on + strand, within HSERO_RS23835 at 5462.612 kb on + strand, within HSERO_RS23835 at 5462.704 kb on - strand, within HSERO_RS23835 at 5462.751 kb on - strand, within HSERO_RS23835 at 5463.033 kb on + strand, within HSERO_RS23835 at 5463.037 kb on - strand, within HSERO_RS23835 at 5463.043 kb on + strand, within HSERO_RS23835 at 5463.190 kb on + strand, within HSERO_RS23835 at 5463.337 kb on - strand at 5463.473 kb on - strand at 5463.665 kb on - strand at 5463.689 kb on - strand at 5463.919 kb on - strand, within HSERO_RS23840 at 5463.923 kb on + strand, within HSERO_RS23840 at 5463.987 kb on - strand, within HSERO_RS23840 at 5464.024 kb on + strand, within HSERO_RS23840 at 5464.057 kb on + strand, within HSERO_RS23840 at 5464.084 kb on - strand, within HSERO_RS23840 at 5464.127 kb on - strand, within HSERO_RS23840 at 5464.127 kb on - strand, within HSERO_RS23840 at 5464.289 kb on - strand, within HSERO_RS23840
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 5,461,486 - -0.4 5,461,555 + -0.1 5,461,662 - -0.9 5,461,892 + HSERO_RS23830 0.36 +0.8 5,461,935 - HSERO_RS23830 0.42 +0.1 5,462,101 - HSERO_RS23830 0.66 -0.4 5,462,169 - HSERO_RS23830 0.75 +0.2 5,462,343 + +0.1 5,462,393 - +0.9 5,462,400 + -0.7 5,462,461 + +0.2 5,462,504 + HSERO_RS23835 0.11 +1.4 5,462,612 + HSERO_RS23835 0.22 +0.3 5,462,704 - HSERO_RS23835 0.32 +0.4 5,462,751 - HSERO_RS23835 0.37 -0.2 5,463,033 + HSERO_RS23835 0.67 +0.6 5,463,037 - HSERO_RS23835 0.68 +0.0 5,463,043 + HSERO_RS23835 0.68 +0.7 5,463,190 + HSERO_RS23835 0.84 +0.1 5,463,337 - -0.0 5,463,473 - +0.1 5,463,665 - -0.4 5,463,689 - +0.6 5,463,919 - HSERO_RS23840 0.18 +0.2 5,463,923 + HSERO_RS23840 0.18 -0.2 5,463,987 - HSERO_RS23840 0.20 +0.0 5,464,024 + HSERO_RS23840 0.21 -0.1 5,464,057 + HSERO_RS23840 0.23 -0.3 5,464,084 - HSERO_RS23840 0.23 -0.1 5,464,127 - HSERO_RS23840 0.25 -0.4 5,464,127 - HSERO_RS23840 0.25 -0.3 5,464,289 - HSERO_RS23840 0.31 +0.6
Or see this region's nucleotide sequence