Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23445

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23440 and HSERO_RS23445 are separated by 51 nucleotidesHSERO_RS23445 and HSERO_RS23450 overlap by 1 nucleotidesHSERO_RS23450 and HSERO_RS23455 are separated by 77 nucleotides HSERO_RS23440: HSERO_RS23440 - isovaleryl-CoA dehydrogenase, at 5,376,983 to 5,378,167 _RS23440 HSERO_RS23445: HSERO_RS23445 - 2-hydroxychromene-2-carboxylate isomerase, at 5,378,219 to 5,378,821 _RS23445 HSERO_RS23450: HSERO_RS23450 - hypothetical protein, at 5,378,821 to 5,379,231 _RS23450 HSERO_RS23455: HSERO_RS23455 - methylcrotonoyl-CoA carboxylase, at 5,379,309 to 5,380,943 _RS23455 Position (kb) 5378 5379Strain fitness (log2 ratio) -1 0 1at 5377.263 kb on - strand, within HSERO_RS23440at 5377.338 kb on + strand, within HSERO_RS23440at 5377.738 kb on + strand, within HSERO_RS23440at 5377.976 kb on + strand, within HSERO_RS23440at 5378.161 kb on + strandat 5378.229 kb on - strandat 5378.389 kb on + strand, within HSERO_RS23445at 5378.553 kb on - strand, within HSERO_RS23445at 5379.046 kb on + strand, within HSERO_RS23450at 5379.054 kb on - strand, within HSERO_RS23450at 5379.641 kb on - strand, within HSERO_RS23455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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5,377,263 - HSERO_RS23440 0.24 +0.1
5,377,338 + HSERO_RS23440 0.30 +1.3
5,377,738 + HSERO_RS23440 0.64 -0.4
5,377,976 + HSERO_RS23440 0.84 +0.1
5,378,161 + +1.1
5,378,229 - -0.1
5,378,389 + HSERO_RS23445 0.28 +1.1
5,378,553 - HSERO_RS23445 0.55 -0.0
5,379,046 + HSERO_RS23450 0.55 +0.5
5,379,054 - HSERO_RS23450 0.57 -0.4
5,379,641 - HSERO_RS23455 0.20 -0.1

Or see this region's nucleotide sequence