Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23150 and HSERO_RS23155 are separated by 117 nucleotides HSERO_RS23155 and HSERO_RS23160 are separated by 61 nucleotides HSERO_RS23160 and HSERO_RS23165 are separated by 66 nucleotides
HSERO_RS23150: HSERO_RS23150 - AraC family transcriptional regulator, at 5,312,517 to 5,313,458
_RS23150
HSERO_RS23155: HSERO_RS23155 - AraC family transcriptional regulator, at 5,313,576 to 5,314,388
_RS23155
HSERO_RS23160: HSERO_RS23160 - short-chain dehydrogenase, at 5,314,450 to 5,315,208
_RS23160
HSERO_RS23165: HSERO_RS23165 - MFS transporter, at 5,315,275 to 5,316,486
_RS23165
Position (kb) 5314
5315
5316 Strain fitness (log2 ratio) -1
0
1
2 at 5313.534 kb on + strand at 5313.584 kb on + strand at 5313.610 kb on - strand at 5314.027 kb on + strand, within HSERO_RS23155 at 5314.132 kb on - strand, within HSERO_RS23155 at 5314.387 kb on + strand at 5314.423 kb on - strand at 5314.431 kb on - strand at 5314.523 kb on + strand at 5314.676 kb on + strand, within HSERO_RS23160 at 5314.711 kb on + strand, within HSERO_RS23160 at 5314.934 kb on - strand, within HSERO_RS23160 at 5314.934 kb on - strand, within HSERO_RS23160 at 5314.946 kb on + strand, within HSERO_RS23160 at 5314.954 kb on - strand, within HSERO_RS23160 at 5315.003 kb on + strand, within HSERO_RS23160 at 5315.160 kb on + strand at 5315.169 kb on + strand at 5315.201 kb on - strand at 5315.329 kb on - strand at 5315.496 kb on + strand, within HSERO_RS23165 at 5315.642 kb on - strand, within HSERO_RS23165 at 5315.707 kb on - strand, within HSERO_RS23165 at 5315.758 kb on + strand, within HSERO_RS23165 at 5315.802 kb on - strand, within HSERO_RS23165 at 5315.970 kb on + strand, within HSERO_RS23165 at 5316.031 kb on - strand, within HSERO_RS23165 at 5316.149 kb on + strand, within HSERO_RS23165 at 5316.159 kb on + strand, within HSERO_RS23165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 5,313,534 + -0.4 5,313,584 + +0.3 5,313,610 - +0.7 5,314,027 + HSERO_RS23155 0.55 +0.0 5,314,132 - HSERO_RS23155 0.68 -0.7 5,314,387 + -1.6 5,314,423 - +0.2 5,314,431 - +0.3 5,314,523 + -0.5 5,314,676 + HSERO_RS23160 0.30 +1.6 5,314,711 + HSERO_RS23160 0.34 +0.2 5,314,934 - HSERO_RS23160 0.64 +0.2 5,314,934 - HSERO_RS23160 0.64 +0.1 5,314,946 + HSERO_RS23160 0.65 -0.5 5,314,954 - HSERO_RS23160 0.66 +0.1 5,315,003 + HSERO_RS23160 0.73 +1.8 5,315,160 + -0.6 5,315,169 + +0.4 5,315,201 - +0.0 5,315,329 - -0.1 5,315,496 + HSERO_RS23165 0.18 -0.4 5,315,642 - HSERO_RS23165 0.30 +0.4 5,315,707 - HSERO_RS23165 0.36 -0.0 5,315,758 + HSERO_RS23165 0.40 -0.0 5,315,802 - HSERO_RS23165 0.43 -0.3 5,315,970 + HSERO_RS23165 0.57 -0.1 5,316,031 - HSERO_RS23165 0.62 -0.6 5,316,149 + HSERO_RS23165 0.72 +0.1 5,316,159 + HSERO_RS23165 0.73 -0.2
Or see this region's nucleotide sequence