Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22610 and HSERO_RS22615 are separated by 63 nucleotides HSERO_RS22615 and HSERO_RS22620 are separated by 82 nucleotides HSERO_RS22620 and HSERO_RS22625 are separated by 181 nucleotides
HSERO_RS22610: HSERO_RS22610 - AraC family transcriptional regulator, at 5,184,100 to 5,184,999
_RS22610
HSERO_RS22615: HSERO_RS22615 - transcriptional regulator, at 5,185,063 to 5,185,701
_RS22615
HSERO_RS22620: HSERO_RS22620 - membrane protein, at 5,185,784 to 5,186,236
_RS22620
HSERO_RS22625: HSERO_RS22625 - LysR family transcriptional regulator, at 5,186,418 to 5,187,323
_RS22625
Position (kb) 5185
5186
5187 Strain fitness (log2 ratio) -1
0
1
2 at 5184.926 kb on - strand at 5185.053 kb on + strand at 5185.110 kb on + strand at 5185.237 kb on - strand, within HSERO_RS22615 at 5185.304 kb on - strand, within HSERO_RS22615 at 5185.565 kb on + strand, within HSERO_RS22615 at 5185.638 kb on - strand at 5185.874 kb on + strand, within HSERO_RS22620 at 5185.874 kb on + strand, within HSERO_RS22620 at 5186.169 kb on - strand, within HSERO_RS22620 at 5186.178 kb on + strand, within HSERO_RS22620 at 5186.213 kb on - strand at 5186.421 kb on + strand at 5186.535 kb on - strand, within HSERO_RS22625 at 5186.810 kb on + strand, within HSERO_RS22625
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 5,184,926 - -0.1 5,185,053 + -0.4 5,185,110 + +0.4 5,185,237 - HSERO_RS22615 0.27 -0.1 5,185,304 - HSERO_RS22615 0.38 -0.7 5,185,565 + HSERO_RS22615 0.79 +0.5 5,185,638 - +2.1 5,185,874 + HSERO_RS22620 0.20 -0.0 5,185,874 + HSERO_RS22620 0.20 +1.5 5,186,169 - HSERO_RS22620 0.85 +0.1 5,186,178 + HSERO_RS22620 0.87 +0.5 5,186,213 - +0.2 5,186,421 + -0.0 5,186,535 - HSERO_RS22625 0.13 -0.3 5,186,810 + HSERO_RS22625 0.43 -0.3
Or see this region's nucleotide sequence