Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19990 and HSERO_RS19995 are separated by 48 nucleotides HSERO_RS19995 and HSERO_RS20000 overlap by 4 nucleotides HSERO_RS20000 and HSERO_RS20005 are separated by 307 nucleotides
HSERO_RS19990: HSERO_RS19990 - acetyl-CoA acetyltransferase, at 4,587,206 to 4,588,408
_RS19990
HSERO_RS19995: HSERO_RS19995 - 3-oxoadipate CoA-transferase subunit B, at 4,588,457 to 4,589,098
_RS19995
HSERO_RS20000: HSERO_RS20000 - 3-oxoadipate CoA-transferase subunit A, at 4,589,095 to 4,589,769
_RS20000
HSERO_RS20005: HSERO_RS20005 - IclR family transcriptional regulator, at 4,590,077 to 4,590,982
_RS20005
Position (kb) 4588
4589
4590 Strain fitness (log2 ratio) -1
0
1 at 4587.501 kb on - strand, within HSERO_RS19990 at 4587.514 kb on - strand, within HSERO_RS19990 at 4587.693 kb on + strand, within HSERO_RS19990 at 4587.773 kb on - strand, within HSERO_RS19990 at 4587.871 kb on - strand, within HSERO_RS19990 at 4588.294 kb on + strand at 4588.446 kb on - strand at 4588.793 kb on - strand, within HSERO_RS19995 at 4589.405 kb on - strand, within HSERO_RS20000 at 4589.514 kb on + strand, within HSERO_RS20000 at 4589.535 kb on + strand, within HSERO_RS20000 at 4589.548 kb on - strand, within HSERO_RS20000 at 4589.561 kb on + strand, within HSERO_RS20000 at 4589.567 kb on + strand, within HSERO_RS20000 at 4589.623 kb on + strand, within HSERO_RS20000 at 4589.667 kb on - strand, within HSERO_RS20000 at 4589.890 kb on - strand at 4590.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 4,587,501 - HSERO_RS19990 0.25 -0.7 4,587,514 - HSERO_RS19990 0.26 -0.4 4,587,693 + HSERO_RS19990 0.40 -0.6 4,587,773 - HSERO_RS19990 0.47 +0.3 4,587,871 - HSERO_RS19990 0.55 +0.1 4,588,294 + -0.3 4,588,446 - +0.1 4,588,793 - HSERO_RS19995 0.52 +0.4 4,589,405 - HSERO_RS20000 0.46 -1.2 4,589,514 + HSERO_RS20000 0.62 -0.0 4,589,535 + HSERO_RS20000 0.65 -0.5 4,589,548 - HSERO_RS20000 0.67 -0.2 4,589,561 + HSERO_RS20000 0.69 -0.2 4,589,567 + HSERO_RS20000 0.70 +0.1 4,589,623 + HSERO_RS20000 0.78 +0.7 4,589,667 - HSERO_RS20000 0.85 +0.1 4,589,890 - -0.4 4,590,065 - -0.5
Or see this region's nucleotide sequence