Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19710 and HSERO_RS19715 are separated by 32 nucleotides HSERO_RS19715 and HSERO_RS19720 are separated by 66 nucleotides HSERO_RS19720 and HSERO_RS19725 are separated by 15 nucleotides
HSERO_RS19710: HSERO_RS19710 - hydrolase, at 4,522,641 to 4,523,510
_RS19710
HSERO_RS19715: HSERO_RS19715 - peptide synthetase, at 4,523,543 to 4,524,145
_RS19715
HSERO_RS19720: HSERO_RS19720 - glyoxalase, at 4,524,212 to 4,524,709
_RS19720
HSERO_RS19725: HSERO_RS19725 - glycosyl hydrolase, at 4,524,725 to 4,525,762
_RS19725
Position (kb) 4524
4525 Strain fitness (log2 ratio) -1
0
1
2 at 4523.240 kb on + strand, within HSERO_RS19710 at 4523.399 kb on - strand, within HSERO_RS19710 at 4523.541 kb on + strand at 4523.549 kb on - strand at 4523.563 kb on - strand at 4523.633 kb on - strand, within HSERO_RS19715 at 4523.638 kb on - strand, within HSERO_RS19715 at 4523.661 kb on + strand, within HSERO_RS19715 at 4523.669 kb on - strand, within HSERO_RS19715 at 4523.669 kb on - strand, within HSERO_RS19715 at 4523.669 kb on - strand, within HSERO_RS19715 at 4523.742 kb on + strand, within HSERO_RS19715 at 4524.112 kb on - strand at 4524.163 kb on + strand at 4524.163 kb on + strand at 4524.163 kb on + strand at 4524.163 kb on + strand at 4524.171 kb on - strand at 4524.181 kb on - strand at 4524.330 kb on - strand, within HSERO_RS19720 at 4524.594 kb on - strand, within HSERO_RS19720 at 4524.676 kb on - strand at 4524.726 kb on - strand at 4524.832 kb on + strand, within HSERO_RS19725 at 4524.850 kb on - strand, within HSERO_RS19725 at 4524.908 kb on + strand, within HSERO_RS19725 at 4524.916 kb on - strand, within HSERO_RS19725 at 4525.067 kb on + strand, within HSERO_RS19725 at 4525.067 kb on + strand, within HSERO_RS19725 at 4525.116 kb on - strand, within HSERO_RS19725 at 4525.170 kb on - strand, within HSERO_RS19725 at 4525.188 kb on + strand, within HSERO_RS19725 at 4525.363 kb on + strand, within HSERO_RS19725 at 4525.405 kb on + strand, within HSERO_RS19725 at 4525.548 kb on + strand at 4525.556 kb on - strand, within HSERO_RS19725 at 4525.688 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 4,523,240 + HSERO_RS19710 0.69 +1.1 4,523,399 - HSERO_RS19710 0.87 +0.3 4,523,541 + +0.8 4,523,549 - -0.2 4,523,563 - +1.3 4,523,633 - HSERO_RS19715 0.15 +0.6 4,523,638 - HSERO_RS19715 0.16 -1.0 4,523,661 + HSERO_RS19715 0.20 +0.2 4,523,669 - HSERO_RS19715 0.21 +0.3 4,523,669 - HSERO_RS19715 0.21 +0.2 4,523,669 - HSERO_RS19715 0.21 +0.4 4,523,742 + HSERO_RS19715 0.33 -0.3 4,524,112 - -0.1 4,524,163 + -1.1 4,524,163 + -1.0 4,524,163 + -1.1 4,524,163 + +0.5 4,524,171 - -0.2 4,524,181 - +0.1 4,524,330 - HSERO_RS19720 0.24 +0.2 4,524,594 - HSERO_RS19720 0.77 +0.6 4,524,676 - +0.3 4,524,726 - +2.1 4,524,832 + HSERO_RS19725 0.10 +0.5 4,524,850 - HSERO_RS19725 0.12 +0.4 4,524,908 + HSERO_RS19725 0.18 -0.8 4,524,916 - HSERO_RS19725 0.18 +0.1 4,525,067 + HSERO_RS19725 0.33 -0.4 4,525,067 + HSERO_RS19725 0.33 -0.0 4,525,116 - HSERO_RS19725 0.38 -0.4 4,525,170 - HSERO_RS19725 0.43 +0.3 4,525,188 + HSERO_RS19725 0.45 +0.6 4,525,363 + HSERO_RS19725 0.61 -0.2 4,525,405 + HSERO_RS19725 0.66 +0.0 4,525,548 + +0.8 4,525,556 - HSERO_RS19725 0.80 +1.2 4,525,688 + +0.3
Or see this region's nucleotide sequence