Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15205

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS15200 and HSERO_RS15205 are separated by 251 nucleotidesHSERO_RS15205 and HSERO_RS15210 are separated by 9 nucleotides HSERO_RS15200: HSERO_RS15200 - malate synthase, at 3,448,631 to 3,450,217 _RS15200 HSERO_RS15205: HSERO_RS15205 - LysR family transcriptional regulator, at 3,450,469 to 3,451,377 _RS15205 HSERO_RS15210: HSERO_RS15210 - beta-lactamase, at 3,451,387 to 3,452,634 _RS15210 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -1 0 1at 3450.415 kb on + strandat 3450.533 kb on - strandat 3450.548 kb on + strandat 3451.068 kb on - strand, within HSERO_RS15205at 3451.100 kb on + strand, within HSERO_RS15205at 3451.300 kb on + strandat 3451.413 kb on + strandat 3451.536 kb on + strand, within HSERO_RS15210at 3451.583 kb on + strand, within HSERO_RS15210at 3451.770 kb on - strand, within HSERO_RS15210at 3451.770 kb on - strand, within HSERO_RS15210at 3451.814 kb on + strand, within HSERO_RS15210at 3451.883 kb on + strand, within HSERO_RS15210at 3451.988 kb on - strand, within HSERO_RS15210at 3452.064 kb on - strand, within HSERO_RS15210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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3,450,415 + -0.4
3,450,533 - +0.5
3,450,548 + +0.2
3,451,068 - HSERO_RS15205 0.66 +0.7
3,451,100 + HSERO_RS15205 0.69 +0.3
3,451,300 + +0.2
3,451,413 + +0.5
3,451,536 + HSERO_RS15210 0.12 -0.7
3,451,583 + HSERO_RS15210 0.16 +0.5
3,451,770 - HSERO_RS15210 0.31 -0.1
3,451,770 - HSERO_RS15210 0.31 +0.4
3,451,814 + HSERO_RS15210 0.34 -0.3
3,451,883 + HSERO_RS15210 0.40 +0.7
3,451,988 - HSERO_RS15210 0.48 +0.2
3,452,064 - HSERO_RS15210 0.54 -1.0

Or see this region's nucleotide sequence