Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS07440 and HSERO_RS07445 are separated by 100 nucleotides HSERO_RS07445 and HSERO_RS07450 are separated by 216 nucleotides HSERO_RS07450 and HSERO_RS07455 are separated by 88 nucleotides
HSERO_RS07440: HSERO_RS07440 - NAD-dependent formate dehydrogenase subunit delta, at 1,704,696 to 1,704,923
_RS07440
HSERO_RS07445: HSERO_RS07445 - FMN reductase, at 1,705,024 to 1,705,524
_RS07445
HSERO_RS07450: HSERO_RS07450 - LysR family transcriptional regulator, at 1,705,741 to 1,706,676
_RS07450
HSERO_RS07455: HSERO_RS07455 - NADPH:quinone oxidoreductase, at 1,706,765 to 1,707,694
_RS07455
Position (kb) 1705
1706
1707 Strain fitness (log2 ratio) -1
0
1
2 at 1704.803 kb on + strand at 1705.027 kb on - strand at 1705.193 kb on - strand, within HSERO_RS07445 at 1705.280 kb on + strand, within HSERO_RS07445 at 1705.384 kb on + strand, within HSERO_RS07445 at 1705.432 kb on - strand, within HSERO_RS07445 at 1705.687 kb on + strand at 1705.695 kb on - strand at 1705.699 kb on - strand at 1705.787 kb on - strand at 1705.862 kb on + strand, within HSERO_RS07450 at 1706.317 kb on - strand, within HSERO_RS07450 at 1706.571 kb on + strand, within HSERO_RS07450 at 1706.579 kb on - strand, within HSERO_RS07450 at 1706.589 kb on + strand at 1706.724 kb on + strand at 1706.986 kb on + strand, within HSERO_RS07455 at 1707.162 kb on + strand, within HSERO_RS07455 at 1707.198 kb on + strand, within HSERO_RS07455 at 1707.206 kb on + strand, within HSERO_RS07455 at 1707.408 kb on - strand, within HSERO_RS07455 at 1707.528 kb on - strand, within HSERO_RS07455 at 1707.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,704,803 + +0.6 1,705,027 - -1.0 1,705,193 - HSERO_RS07445 0.34 +1.1 1,705,280 + HSERO_RS07445 0.51 +0.4 1,705,384 + HSERO_RS07445 0.72 -0.0 1,705,432 - HSERO_RS07445 0.81 -0.5 1,705,687 + +1.1 1,705,695 - -0.4 1,705,699 - -0.9 1,705,787 - +0.0 1,705,862 + HSERO_RS07450 0.13 +0.8 1,706,317 - HSERO_RS07450 0.62 +0.1 1,706,571 + HSERO_RS07450 0.89 +0.5 1,706,579 - HSERO_RS07450 0.90 +0.1 1,706,589 + -0.4 1,706,724 + +0.1 1,706,986 + HSERO_RS07455 0.24 -0.3 1,707,162 + HSERO_RS07455 0.43 +0.0 1,707,198 + HSERO_RS07455 0.47 +0.3 1,707,206 + HSERO_RS07455 0.47 +0.1 1,707,408 - HSERO_RS07455 0.69 +1.6 1,707,528 - HSERO_RS07455 0.82 -0.5 1,707,629 - +1.9
Or see this region's nucleotide sequence