Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06060 and HSERO_RS06065 are separated by 14 nucleotides HSERO_RS06065 and HSERO_RS06070 are separated by 57 nucleotides HSERO_RS06070 and HSERO_RS06075 are separated by 6 nucleotides
HSERO_RS06060: HSERO_RS06060 - nitrate ABC transporter permease, at 1,367,388 to 1,368,311
_RS06060
HSERO_RS06065: HSERO_RS06065 - nitrate ABC transporter ATP-binding protein, at 1,368,326 to 1,369,138
_RS06065
HSERO_RS06070: HSERO_RS06070 - methyl-accepting chemotaxis protein, at 1,369,196 to 1,369,885
_RS06070
HSERO_RS06075: HSERO_RS06075 - membrane protein, at 1,369,892 to 1,370,272
_RS06075
Position (kb) 1368
1369
1370 Strain fitness (log2 ratio) -1
0
1 at 1367.386 kb on - strand at 1367.515 kb on + strand, within HSERO_RS06060 at 1367.559 kb on + strand, within HSERO_RS06060 at 1367.648 kb on + strand, within HSERO_RS06060 at 1367.763 kb on - strand, within HSERO_RS06060 at 1367.792 kb on - strand, within HSERO_RS06060 at 1367.939 kb on - strand at 1367.939 kb on - strand, within HSERO_RS06060 at 1368.019 kb on + strand at 1368.112 kb on + strand, within HSERO_RS06060 at 1368.120 kb on - strand, within HSERO_RS06060 at 1368.181 kb on - strand, within HSERO_RS06060 at 1368.204 kb on + strand, within HSERO_RS06060 at 1368.438 kb on - strand, within HSERO_RS06065 at 1368.438 kb on - strand, within HSERO_RS06065 at 1368.563 kb on + strand, within HSERO_RS06065 at 1368.571 kb on - strand, within HSERO_RS06065 at 1368.736 kb on - strand, within HSERO_RS06065 at 1368.880 kb on + strand, within HSERO_RS06065 at 1368.938 kb on - strand, within HSERO_RS06065 at 1368.942 kb on - strand, within HSERO_RS06065 at 1368.973 kb on + strand, within HSERO_RS06065 at 1369.069 kb on - strand at 1369.111 kb on + strand at 1369.219 kb on + strand at 1369.224 kb on + strand at 1369.326 kb on + strand at 1369.429 kb on - strand, within HSERO_RS06070 at 1369.446 kb on + strand, within HSERO_RS06070 at 1369.570 kb on - strand at 1369.735 kb on + strand, within HSERO_RS06070 at 1370.008 kb on + strand, within HSERO_RS06075 at 1370.016 kb on - strand, within HSERO_RS06075 at 1370.109 kb on + strand, within HSERO_RS06075 at 1370.136 kb on - strand, within HSERO_RS06075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,367,386 - -0.9 1,367,515 + HSERO_RS06060 0.14 -0.4 1,367,559 + HSERO_RS06060 0.19 -0.3 1,367,648 + HSERO_RS06060 0.28 +0.1 1,367,763 - HSERO_RS06060 0.41 -0.7 1,367,792 - HSERO_RS06060 0.44 +0.4 1,367,939 - +0.1 1,367,939 - HSERO_RS06060 0.60 -0.9 1,368,019 + -0.9 1,368,112 + HSERO_RS06060 0.78 -0.1 1,368,120 - HSERO_RS06060 0.79 +1.1 1,368,181 - HSERO_RS06060 0.86 -0.2 1,368,204 + HSERO_RS06060 0.88 -0.4 1,368,438 - HSERO_RS06065 0.14 +0.9 1,368,438 - HSERO_RS06065 0.14 +0.5 1,368,563 + HSERO_RS06065 0.29 +0.7 1,368,571 - HSERO_RS06065 0.30 -0.5 1,368,736 - HSERO_RS06065 0.50 +0.5 1,368,880 + HSERO_RS06065 0.68 -0.3 1,368,938 - HSERO_RS06065 0.75 +0.3 1,368,942 - HSERO_RS06065 0.76 +0.3 1,368,973 + HSERO_RS06065 0.80 +1.1 1,369,069 - +0.4 1,369,111 + +0.3 1,369,219 + -0.2 1,369,224 + -0.1 1,369,326 + +0.1 1,369,429 - HSERO_RS06070 0.34 +0.4 1,369,446 + HSERO_RS06070 0.36 -0.1 1,369,570 - +1.5 1,369,735 + HSERO_RS06070 0.78 +0.2 1,370,008 + HSERO_RS06075 0.30 -0.0 1,370,016 - HSERO_RS06075 0.33 -0.4 1,370,109 + HSERO_RS06075 0.57 -0.2 1,370,136 - HSERO_RS06075 0.64 -0.2
Or see this region's nucleotide sequence