Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03905 and HSERO_RS03910 are separated by 235 nucleotides HSERO_RS03910 and HSERO_RS03915 are separated by 48 nucleotides HSERO_RS03915 and HSERO_RS03920 are separated by 7 nucleotides HSERO_RS03920 and HSERO_RS03925 overlap by 4 nucleotides
HSERO_RS03905: HSERO_RS03905 - RNA polymerase subunit sigma-24, at 861,380 to 862,114
_RS03905
HSERO_RS03910: HSERO_RS03910 - hypothetical protein, at 862,350 to 863,399
_RS03910
HSERO_RS03915: HSERO_RS03915 - hypothetical protein, at 863,448 to 863,831
_RS03915
HSERO_RS03920: HSERO_RS03920 - hypothetical protein, at 863,839 to 864,165
_RS03920
HSERO_RS03925: HSERO_RS03925 - hypothetical protein, at 864,162 to 864,617
_RS03925
Position (kb) 862
863
864 Strain fitness (log2 ratio) -1
0
1
2 at 861.712 kb on - strand, within HSERO_RS03905 at 861.739 kb on - strand, within HSERO_RS03905 at 861.764 kb on - strand, within HSERO_RS03905 at 861.771 kb on - strand, within HSERO_RS03905 at 862.406 kb on + strand at 862.424 kb on - strand at 862.427 kb on + strand at 862.543 kb on - strand, within HSERO_RS03910 at 862.797 kb on + strand, within HSERO_RS03910 at 862.873 kb on - strand, within HSERO_RS03910 at 863.306 kb on + strand at 863.306 kb on + strand at 863.478 kb on + strand at 863.519 kb on + strand, within HSERO_RS03915 at 863.521 kb on - strand, within HSERO_RS03915 at 863.815 kb on - strand at 864.017 kb on + strand, within HSERO_RS03920 at 864.025 kb on - strand, within HSERO_RS03920 at 864.146 kb on + strand at 864.154 kb on - strand at 864.246 kb on - strand, within HSERO_RS03925 at 864.369 kb on + strand, within HSERO_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 861,712 - HSERO_RS03905 0.45 -0.5 861,739 - HSERO_RS03905 0.49 -0.2 861,764 - HSERO_RS03905 0.52 -0.7 861,771 - HSERO_RS03905 0.53 +0.5 862,406 + +0.2 862,424 - +0.6 862,427 + -0.7 862,543 - HSERO_RS03910 0.18 +0.0 862,797 + HSERO_RS03910 0.43 +0.3 862,873 - HSERO_RS03910 0.50 +1.9 863,306 + -0.5 863,306 + -0.3 863,478 + +0.0 863,519 + HSERO_RS03915 0.18 -0.3 863,521 - HSERO_RS03915 0.19 +0.4 863,815 - -0.2 864,017 + HSERO_RS03920 0.54 -0.0 864,025 - HSERO_RS03920 0.57 +0.5 864,146 + +0.3 864,154 - -0.2 864,246 - HSERO_RS03925 0.18 -0.4 864,369 + HSERO_RS03925 0.45 +0.3
Or see this region's nucleotide sequence