Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03130 and HSERO_RS03135 overlap by 14 nucleotides HSERO_RS03135 and HSERO_RS03140 are separated by 48 nucleotides HSERO_RS03140 and HSERO_RS03145 are separated by 10 nucleotides
HSERO_RS03130: HSERO_RS03130 - chemotaxis protein CheY, at 685,077 to 686,222
_RS03130
HSERO_RS03135: HSERO_RS03135 - diguanylate cyclase, at 686,209 to 687,471
_RS03135
HSERO_RS03140: HSERO_RS03140 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 687,520 to 688,005
_RS03140
HSERO_RS03145: HSERO_RS03145 - poly(A) polymerase, at 688,016 to 689,620
_RS03145
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 685.378 kb on + strand, within HSERO_RS03130 at 685.379 kb on - strand, within HSERO_RS03130 at 685.476 kb on + strand, within HSERO_RS03130 at 685.527 kb on - strand, within HSERO_RS03130 at 685.540 kb on + strand, within HSERO_RS03130 at 685.557 kb on + strand, within HSERO_RS03130 at 685.635 kb on - strand, within HSERO_RS03130 at 685.728 kb on - strand, within HSERO_RS03130 at 685.738 kb on - strand, within HSERO_RS03130 at 685.760 kb on - strand, within HSERO_RS03130 at 685.772 kb on - strand, within HSERO_RS03130 at 686.132 kb on + strand at 686.188 kb on + strand at 686.213 kb on - strand at 686.224 kb on - strand at 686.235 kb on + strand at 686.861 kb on + strand, within HSERO_RS03135 at 686.861 kb on + strand, within HSERO_RS03135 at 686.865 kb on + strand, within HSERO_RS03135 at 687.077 kb on - strand, within HSERO_RS03135 at 687.106 kb on - strand, within HSERO_RS03135 at 687.131 kb on + strand, within HSERO_RS03135 at 687.182 kb on - strand, within HSERO_RS03135 at 687.346 kb on - strand at 687.396 kb on + strand at 687.477 kb on + strand at 687.487 kb on - strand at 688.021 kb on - strand at 688.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 685,378 + HSERO_RS03130 0.26 -0.1 685,379 - HSERO_RS03130 0.26 +0.4 685,476 + HSERO_RS03130 0.35 +0.2 685,527 - HSERO_RS03130 0.39 -1.1 685,540 + HSERO_RS03130 0.40 +0.0 685,557 + HSERO_RS03130 0.42 -1.0 685,635 - HSERO_RS03130 0.49 +0.2 685,728 - HSERO_RS03130 0.57 +0.4 685,738 - HSERO_RS03130 0.58 +3.9 685,760 - HSERO_RS03130 0.60 -0.8 685,772 - HSERO_RS03130 0.61 -0.4 686,132 + +0.4 686,188 + -0.1 686,213 - -0.1 686,224 - +0.5 686,235 + +0.2 686,861 + HSERO_RS03135 0.52 +0.6 686,861 + HSERO_RS03135 0.52 -0.0 686,865 + HSERO_RS03135 0.52 +0.5 687,077 - HSERO_RS03135 0.69 +0.6 687,106 - HSERO_RS03135 0.71 -0.9 687,131 + HSERO_RS03135 0.73 +1.1 687,182 - HSERO_RS03135 0.77 +1.7 687,346 - -0.8 687,396 + -0.4 687,477 + -0.3 687,487 - -0.1 688,021 - +0.1 688,145 + +0.5
Or see this region's nucleotide sequence