Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02935 and HSERO_RS02940 are separated by 48 nucleotides HSERO_RS02940 and HSERO_RS02945 are separated by 104 nucleotides HSERO_RS02945 and HSERO_RS02950 are separated by 176 nucleotides
HSERO_RS02935: HSERO_RS02935 - LysR family transcriptional regulator, at 644,592 to 645,491
_RS02935
HSERO_RS02940: HSERO_RS02940 - hypothetical protein, at 645,540 to 646,382
_RS02940
HSERO_RS02945: HSERO_RS02945 - LysR family transcriptional regulator, at 646,487 to 646,903
_RS02945
HSERO_RS02950: HSERO_RS02950 - DNA methyltransferase, at 647,080 to 648,336
_RS02950
Position (kb) 646
647 Strain fitness (log2 ratio) -2
-1
0
1 at 645.608 kb on + strand at 645.630 kb on + strand, within HSERO_RS02940 at 645.630 kb on + strand, within HSERO_RS02940 at 645.638 kb on - strand, within HSERO_RS02940 at 645.892 kb on + strand, within HSERO_RS02940 at 646.032 kb on + strand, within HSERO_RS02940 at 646.257 kb on + strand, within HSERO_RS02940 at 646.312 kb on - strand at 646.341 kb on + strand at 646.468 kb on + strand at 646.595 kb on - strand, within HSERO_RS02945 at 646.595 kb on - strand, within HSERO_RS02945 at 646.875 kb on + strand at 646.984 kb on + strand at 646.992 kb on - strand at 647.013 kb on + strand at 647.091 kb on - strand at 647.182 kb on - strand at 647.216 kb on + strand, within HSERO_RS02950 at 647.234 kb on - strand, within HSERO_RS02950 at 647.608 kb on - strand, within HSERO_RS02950 at 647.818 kb on - strand, within HSERO_RS02950 at 647.854 kb on - strand, within HSERO_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 645,608 + +0.7 645,630 + HSERO_RS02940 0.11 +0.0 645,630 + HSERO_RS02940 0.11 -0.6 645,638 - HSERO_RS02940 0.12 +0.1 645,892 + HSERO_RS02940 0.42 +0.0 646,032 + HSERO_RS02940 0.58 -0.0 646,257 + HSERO_RS02940 0.85 -1.3 646,312 - +1.1 646,341 + +0.6 646,468 + -0.4 646,595 - HSERO_RS02945 0.26 +0.5 646,595 - HSERO_RS02945 0.26 +0.3 646,875 + -0.9 646,984 + -2.5 646,992 - +0.1 647,013 + -0.2 647,091 - +0.8 647,182 - +0.4 647,216 + HSERO_RS02950 0.11 +0.8 647,234 - HSERO_RS02950 0.12 +0.4 647,608 - HSERO_RS02950 0.42 +0.1 647,818 - HSERO_RS02950 0.59 -0.2 647,854 - HSERO_RS02950 0.62 +0.4
Or see this region's nucleotide sequence