Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02905 and HSERO_RS02910 are separated by 46 nucleotides HSERO_RS02910 and HSERO_RS02915 are separated by 123 nucleotides HSERO_RS02915 and HSERO_RS02920 are separated by 97 nucleotides
HSERO_RS02905: HSERO_RS02905 - alkaline phosphatase, at 638,054 to 639,682
_RS02905
HSERO_RS02910: HSERO_RS02910 - IclR family transcriptional regulator, at 639,729 to 640,526
_RS02910
HSERO_RS02915: HSERO_RS02915 - short-chain dehydrogenase, at 640,650 to 641,375
_RS02915
HSERO_RS02920: HSERO_RS02920 - major facilitator superfamily protein, at 641,473 to 642,759
_RS02920
Position (kb) 640
641
642 Strain fitness (log2 ratio) -1
0
1 at 639.928 kb on - strand, within HSERO_RS02910 at 640.153 kb on - strand, within HSERO_RS02910 at 640.181 kb on - strand, within HSERO_RS02910 at 640.421 kb on - strand, within HSERO_RS02910 at 640.499 kb on + strand at 640.734 kb on - strand, within HSERO_RS02915 at 640.819 kb on + strand, within HSERO_RS02915 at 641.270 kb on - strand, within HSERO_RS02915 at 641.308 kb on + strand at 641.349 kb on - strand at 641.389 kb on - strand at 641.453 kb on - strand at 641.509 kb on + strand at 641.509 kb on + strand at 641.515 kb on + strand at 641.715 kb on - strand, within HSERO_RS02920 at 641.736 kb on - strand, within HSERO_RS02920 at 641.763 kb on - strand, within HSERO_RS02920 at 641.814 kb on + strand, within HSERO_RS02920 at 641.814 kb on + strand, within HSERO_RS02920 at 641.891 kb on + strand, within HSERO_RS02920 at 641.899 kb on - strand, within HSERO_RS02920 at 642.050 kb on - strand, within HSERO_RS02920 at 642.094 kb on + strand, within HSERO_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 639,928 - HSERO_RS02910 0.25 -1.7 640,153 - HSERO_RS02910 0.53 -0.5 640,181 - HSERO_RS02910 0.57 -0.6 640,421 - HSERO_RS02910 0.87 +0.4 640,499 + +0.2 640,734 - HSERO_RS02915 0.12 +1.1 640,819 + HSERO_RS02915 0.23 +0.6 641,270 - HSERO_RS02915 0.85 -0.0 641,308 + -0.5 641,349 - +0.3 641,389 - -0.6 641,453 - -0.3 641,509 + -1.2 641,509 + -0.3 641,515 + +0.1 641,715 - HSERO_RS02920 0.19 -0.4 641,736 - HSERO_RS02920 0.20 +0.1 641,763 - HSERO_RS02920 0.23 -0.0 641,814 + HSERO_RS02920 0.26 -0.5 641,814 + HSERO_RS02920 0.26 -0.6 641,891 + HSERO_RS02920 0.32 -0.0 641,899 - HSERO_RS02920 0.33 -0.2 642,050 - HSERO_RS02920 0.45 -0.0 642,094 + HSERO_RS02920 0.48 +0.1
Or see this region's nucleotide sequence