Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02640 and HSERO_RS02645 are separated by 400 nucleotides HSERO_RS02645 and HSERO_RS02650 are separated by 162 nucleotides
HSERO_RS02640: HSERO_RS02640 - dihydrofolate reductase, at 578,248 to 579,201
_RS02640
HSERO_RS02645: HSERO_RS02645 - MFS transporter, at 579,602 to 581,056
_RS02645
HSERO_RS02650: HSERO_RS02650 - dihydroxy-acid dehydratase, at 581,219 to 583,081
_RS02650
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 578.652 kb on + strand, within HSERO_RS02640 at 578.689 kb on + strand, within HSERO_RS02640 at 578.830 kb on + strand, within HSERO_RS02640 at 578.949 kb on + strand, within HSERO_RS02640 at 578.994 kb on + strand, within HSERO_RS02640 at 579.086 kb on + strand, within HSERO_RS02640 at 579.094 kb on - strand, within HSERO_RS02640 at 579.095 kb on + strand, within HSERO_RS02640 at 579.095 kb on + strand, within HSERO_RS02640 at 579.103 kb on - strand, within HSERO_RS02640 at 579.128 kb on + strand at 579.411 kb on + strand at 579.584 kb on + strand at 579.626 kb on - strand at 579.722 kb on + strand at 579.743 kb on + strand at 579.769 kb on + strand, within HSERO_RS02645 at 579.863 kb on - strand, within HSERO_RS02645 at 579.876 kb on + strand, within HSERO_RS02645 at 579.876 kb on + strand, within HSERO_RS02645 at 579.884 kb on - strand, within HSERO_RS02645 at 580.029 kb on - strand, within HSERO_RS02645 at 580.034 kb on + strand, within HSERO_RS02645 at 580.034 kb on + strand, within HSERO_RS02645 at 580.047 kb on - strand, within HSERO_RS02645 at 580.192 kb on + strand, within HSERO_RS02645 at 580.231 kb on + strand, within HSERO_RS02645 at 580.405 kb on - strand, within HSERO_RS02645 at 580.493 kb on + strand, within HSERO_RS02645 at 580.522 kb on + strand, within HSERO_RS02645 at 580.708 kb on + strand, within HSERO_RS02645 at 580.829 kb on + strand, within HSERO_RS02645 at 580.946 kb on + strand at 580.992 kb on + strand at 581.010 kb on - strand at 581.036 kb on - strand at 581.171 kb on - strand at 581.179 kb on - strand at 581.199 kb on + strand at 581.207 kb on - strand at 581.254 kb on - strand at 581.328 kb on - strand at 581.343 kb on - strand at 581.536 kb on - strand, within HSERO_RS02650 at 581.536 kb on - strand, within HSERO_RS02650 at 581.639 kb on - strand, within HSERO_RS02650
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 578,652 + HSERO_RS02640 0.42 -0.3 578,689 + HSERO_RS02640 0.46 +0.3 578,830 + HSERO_RS02640 0.61 -0.1 578,949 + HSERO_RS02640 0.73 +0.5 578,994 + HSERO_RS02640 0.78 -0.3 579,086 + HSERO_RS02640 0.88 +0.5 579,094 - HSERO_RS02640 0.89 -0.6 579,095 + HSERO_RS02640 0.89 +0.3 579,095 + HSERO_RS02640 0.89 +0.1 579,103 - HSERO_RS02640 0.90 +0.0 579,128 + -0.2 579,411 + -1.1 579,584 + -0.0 579,626 - -0.4 579,722 + -0.2 579,743 + -0.5 579,769 + HSERO_RS02645 0.11 +0.2 579,863 - HSERO_RS02645 0.18 -0.2 579,876 + HSERO_RS02645 0.19 +1.7 579,876 + HSERO_RS02645 0.19 +0.0 579,884 - HSERO_RS02645 0.19 +0.7 580,029 - HSERO_RS02645 0.29 +0.3 580,034 + HSERO_RS02645 0.30 +0.2 580,034 + HSERO_RS02645 0.30 +1.3 580,047 - HSERO_RS02645 0.31 -0.2 580,192 + HSERO_RS02645 0.41 -0.2 580,231 + HSERO_RS02645 0.43 +1.1 580,405 - HSERO_RS02645 0.55 +0.5 580,493 + HSERO_RS02645 0.61 -0.1 580,522 + HSERO_RS02645 0.63 +0.0 580,708 + HSERO_RS02645 0.76 -0.0 580,829 + HSERO_RS02645 0.84 +0.2 580,946 + -1.4 580,992 + -0.2 581,010 - +0.5 581,036 - +0.1 581,171 - -4.4 581,179 - -0.3 581,199 + -1.4 581,207 - -3.6 581,254 - -4.0 581,328 - -6.4 581,343 - -3.3 581,536 - HSERO_RS02650 0.17 -3.8 581,536 - HSERO_RS02650 0.17 -2.8 581,639 - HSERO_RS02650 0.23 -5.8
Or see this region's nucleotide sequence