Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02210 and HSERO_RS02215 are separated by 216 nucleotides HSERO_RS02215 and HSERO_RS02220 are separated by 64 nucleotides
HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243
_RS02210
HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893
_RS02215
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
Position (kb) 483
484
485 Strain fitness (log2 ratio) -1
0
1
2 at 482.492 kb on + strand, within HSERO_RS02210 at 482.602 kb on + strand, within HSERO_RS02210 at 482.690 kb on + strand, within HSERO_RS02210 at 482.818 kb on + strand, within HSERO_RS02210 at 483.190 kb on + strand at 483.352 kb on + strand at 483.361 kb on + strand at 483.457 kb on + strand at 483.465 kb on - strand at 483.465 kb on - strand at 484.316 kb on - strand, within HSERO_RS02215 at 484.940 kb on - strand at 484.990 kb on + strand at 485.084 kb on - strand at 485.276 kb on - strand, within HSERO_RS02220 at 485.276 kb on - strand, within HSERO_RS02220 at 485.362 kb on + strand, within HSERO_RS02220 at 485.367 kb on + strand, within HSERO_RS02220 at 485.588 kb on + strand, within HSERO_RS02220 at 485.598 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.831 kb on - strand, within HSERO_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 482,492 + HSERO_RS02210 0.33 -0.2 482,602 + HSERO_RS02210 0.43 -0.4 482,690 + HSERO_RS02210 0.50 +0.0 482,818 + HSERO_RS02210 0.62 +0.9 483,190 + -0.5 483,352 + -0.2 483,361 + +0.1 483,457 + -0.0 483,465 - -0.3 483,465 - +0.2 484,316 - HSERO_RS02215 0.60 +1.7 484,940 - +0.8 484,990 + -1.6 485,084 - +0.7 485,276 - HSERO_RS02220 0.22 +0.5 485,276 - HSERO_RS02220 0.22 -0.6 485,362 + HSERO_RS02220 0.27 +1.8 485,367 + HSERO_RS02220 0.28 +0.2 485,588 + HSERO_RS02220 0.43 -0.4 485,598 + HSERO_RS02220 0.43 +0.2 485,620 + HSERO_RS02220 0.45 +0.5 485,620 + HSERO_RS02220 0.45 -0.1 485,620 + HSERO_RS02220 0.45 -0.0 485,628 - HSERO_RS02220 0.45 -0.1 485,628 - HSERO_RS02220 0.45 +0.2 485,831 - HSERO_RS02220 0.59 -0.2
Or see this region's nucleotide sequence