Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02195 and HSERO_RS02200 overlap by 4 nucleotides HSERO_RS02200 and HSERO_RS02205 overlap by 1 nucleotides HSERO_RS02205 and HSERO_RS02210 are separated by 46 nucleotides
HSERO_RS02195: HSERO_RS02195 - sugar ABC transporter permease, at 479,558 to 480,532
_RS02195
HSERO_RS02200: HSERO_RS02200 - mannitol ABC transporter permease, at 480,529 to 481,344
_RS02200
HSERO_RS02205: HSERO_RS02205 - phosphatase, at 481,344 to 482,078
_RS02205
HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243
_RS02210
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 479.582 kb on - strand at 479.584 kb on - strand at 479.589 kb on - strand at 479.708 kb on + strand, within HSERO_RS02195 at 479.838 kb on - strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.882 kb on + strand, within HSERO_RS02195 at 479.885 kb on - strand, within HSERO_RS02195 at 480.244 kb on - strand, within HSERO_RS02195 at 480.404 kb on + strand, within HSERO_RS02195 at 480.413 kb on - strand, within HSERO_RS02195 at 480.508 kb on + strand at 480.516 kb on - strand at 480.516 kb on - strand at 480.614 kb on - strand at 480.648 kb on - strand, within HSERO_RS02200 at 480.705 kb on - strand, within HSERO_RS02200 at 480.727 kb on + strand, within HSERO_RS02200 at 480.855 kb on + strand, within HSERO_RS02200 at 480.929 kb on - strand, within HSERO_RS02200 at 480.964 kb on + strand, within HSERO_RS02200 at 481.173 kb on + strand, within HSERO_RS02200 at 481.230 kb on + strand, within HSERO_RS02200 at 481.238 kb on - strand, within HSERO_RS02200 at 481.287 kb on + strand at 481.318 kb on + strand at 481.318 kb on + strand at 481.812 kb on - strand, within HSERO_RS02205 at 481.883 kb on - strand, within HSERO_RS02205 at 481.965 kb on + strand, within HSERO_RS02205 at 482.066 kb on - strand at 482.105 kb on - strand at 482.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 479,582 - +0.2 479,584 - -0.2 479,589 - +0.3 479,708 + HSERO_RS02195 0.15 +0.6 479,838 - HSERO_RS02195 0.29 -1.5 479,877 + HSERO_RS02195 0.33 -0.2 479,877 + HSERO_RS02195 0.33 -1.1 479,882 + HSERO_RS02195 0.33 +0.1 479,885 - HSERO_RS02195 0.34 -0.4 480,244 - HSERO_RS02195 0.70 +0.3 480,404 + HSERO_RS02195 0.87 +0.4 480,413 - HSERO_RS02195 0.88 +0.1 480,508 + -0.3 480,516 - -0.5 480,516 - -0.7 480,614 - -0.5 480,648 - HSERO_RS02200 0.15 +0.1 480,705 - HSERO_RS02200 0.22 +0.0 480,727 + HSERO_RS02200 0.24 +0.0 480,855 + HSERO_RS02200 0.40 +0.3 480,929 - HSERO_RS02200 0.49 +0.4 480,964 + HSERO_RS02200 0.53 +0.1 481,173 + HSERO_RS02200 0.79 +1.1 481,230 + HSERO_RS02200 0.86 +0.6 481,238 - HSERO_RS02200 0.87 +1.1 481,287 + -0.0 481,318 + +0.6 481,318 + +0.5 481,812 - HSERO_RS02205 0.64 +0.5 481,883 - HSERO_RS02205 0.73 -0.5 481,965 + HSERO_RS02205 0.84 +0.4 482,066 - -0.1 482,105 - +0.1 482,149 - -0.1
Or see this region's nucleotide sequence