Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01445 and HSERO_RS01450 overlap by 1 nucleotides HSERO_RS01450 and HSERO_RS01455 are separated by 205 nucleotides HSERO_RS01455 and HSERO_RS01460 are separated by 289 nucleotides HSERO_RS01460 and HSERO_RS01465 are separated by 133 nucleotides
HSERO_RS01445: HSERO_RS01445 - biopolymer transporter TonB, at 313,202 to 313,912
_RS01445
HSERO_RS01450: HSERO_RS01450 - biopolymer transporter ExbD, at 313,912 to 314,319
_RS01450
HSERO_RS01455: HSERO_RS01455 - hypothetical protein, at 314,525 to 315,103
_RS01455
HSERO_RS01460: HSERO_RS01460 - transcriptional regulator, at 315,393 to 315,749
_RS01460
HSERO_RS01465: HSERO_RS01465 - CDP-diacylglycerol pyrophosphatase, at 315,883 to 316,647
_RS01465
Position (kb) 314
315
316 Strain fitness (log2 ratio) -1
0
1 at 313.619 kb on + strand, within HSERO_RS01445 at 313.674 kb on + strand, within HSERO_RS01445 at 313.720 kb on + strand, within HSERO_RS01445 at 313.816 kb on + strand, within HSERO_RS01445 at 314.135 kb on + strand, within HSERO_RS01450 at 314.304 kb on + strand at 314.304 kb on + strand at 314.406 kb on + strand at 314.406 kb on + strand at 314.406 kb on + strand at 314.414 kb on - strand at 314.421 kb on + strand at 314.426 kb on + strand at 314.675 kb on - strand, within HSERO_RS01455 at 314.836 kb on + strand, within HSERO_RS01455 at 315.131 kb on + strand at 315.215 kb on - strand at 315.657 kb on - strand, within HSERO_RS01460 at 315.798 kb on + strand at 315.860 kb on + strand at 315.899 kb on - strand at 316.058 kb on - strand, within HSERO_RS01465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 313,619 + HSERO_RS01445 0.59 +0.8 313,674 + HSERO_RS01445 0.66 -0.0 313,720 + HSERO_RS01445 0.73 +0.1 313,816 + HSERO_RS01445 0.86 +0.3 314,135 + HSERO_RS01450 0.55 -0.5 314,304 + -0.5 314,304 + +0.7 314,406 + +0.2 314,406 + -1.3 314,406 + +0.1 314,414 - -0.0 314,421 + +0.8 314,426 + -0.4 314,675 - HSERO_RS01455 0.26 +0.8 314,836 + HSERO_RS01455 0.54 -1.1 315,131 + +0.3 315,215 - +0.7 315,657 - HSERO_RS01460 0.74 -0.4 315,798 + -0.4 315,860 + +0.4 315,899 - +0.1 316,058 - HSERO_RS01465 0.23 +0.7
Or see this region's nucleotide sequence