Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00150 and HSERO_RS00155 are separated by 231 nucleotides HSERO_RS00155 and HSERO_RS00160 are separated by 65 nucleotides HSERO_RS00160 and HSERO_RS00165 are separated by 232 nucleotides
HSERO_RS00150: HSERO_RS00150 - chemotaxis protein, at 41,074 to 42,678
_RS00150
HSERO_RS00155: HSERO_RS00155 - ABC transporter, at 42,910 to 43,548
_RS00155
HSERO_RS00160: HSERO_RS00160 - hypothetical protein, at 43,614 to 43,865
_RS00160
HSERO_RS00165: HSERO_RS00165 - TonB-dependent receptor, at 44,098 to 46,347
_RS00165
Position (kb) 43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 42.659 kb on - strand at 42.794 kb on + strand at 42.865 kb on - strand at 42.923 kb on + strand at 43.059 kb on - strand, within HSERO_RS00155 at 43.403 kb on + strand, within HSERO_RS00155 at 43.411 kb on - strand, within HSERO_RS00155 at 43.437 kb on - strand, within HSERO_RS00155 at 43.476 kb on + strand, within HSERO_RS00155 at 43.476 kb on + strand, within HSERO_RS00155 at 43.538 kb on - strand at 43.701 kb on - strand, within HSERO_RS00160 at 43.722 kb on - strand, within HSERO_RS00160 at 43.724 kb on + strand, within HSERO_RS00160 at 43.768 kb on + strand, within HSERO_RS00160 at 44.070 kb on - strand at 44.119 kb on + strand at 44.150 kb on + strand at 44.336 kb on + strand, within HSERO_RS00165 at 44.363 kb on - strand, within HSERO_RS00165 at 44.403 kb on - strand, within HSERO_RS00165 at 44.457 kb on - strand, within HSERO_RS00165 at 44.608 kb on - strand, within HSERO_RS00165 at 44.653 kb on + strand, within HSERO_RS00165 at 44.719 kb on - strand, within HSERO_RS00165 at 44.719 kb on - strand, within HSERO_RS00165 at 44.751 kb on + strand, within HSERO_RS00165 at 44.751 kb on + strand, within HSERO_RS00165 at 44.855 kb on + strand, within HSERO_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 42,659 - -0.2 42,794 + -1.0 42,865 - -2.8 42,923 + -0.5 43,059 - HSERO_RS00155 0.23 +0.2 43,403 + HSERO_RS00155 0.77 -0.3 43,411 - HSERO_RS00155 0.78 -0.4 43,437 - HSERO_RS00155 0.82 -1.8 43,476 + HSERO_RS00155 0.89 +0.6 43,476 + HSERO_RS00155 0.89 +0.2 43,538 - +0.3 43,701 - HSERO_RS00160 0.35 +0.5 43,722 - HSERO_RS00160 0.43 +0.2 43,724 + HSERO_RS00160 0.44 +0.6 43,768 + HSERO_RS00160 0.61 +0.2 44,070 - -0.3 44,119 + +0.2 44,150 + -0.2 44,336 + HSERO_RS00165 0.11 -0.1 44,363 - HSERO_RS00165 0.12 +0.2 44,403 - HSERO_RS00165 0.14 +0.8 44,457 - HSERO_RS00165 0.16 -1.2 44,608 - HSERO_RS00165 0.23 +0.1 44,653 + HSERO_RS00165 0.25 +0.1 44,719 - HSERO_RS00165 0.28 +0.0 44,719 - HSERO_RS00165 0.28 +0.5 44,751 + HSERO_RS00165 0.29 +0.1 44,751 + HSERO_RS00165 0.29 -0.1 44,855 + HSERO_RS00165 0.34 -0.2
Or see this region's nucleotide sequence