Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3970 and Ga0059261_3971 are separated by 41 nucleotides Ga0059261_3971 and Ga0059261_3972 are separated by 166 nucleotides Ga0059261_3972 and Ga0059261_3973 are separated by 112 nucleotides
Ga0059261_3970: Ga0059261_3970 - Predicted RNA polymerase sigma factor containing a TPR repeat domain, at 4,085,279 to 4,086,550
_3970
Ga0059261_3971: Ga0059261_3971 - Uncharacterized protein conserved in bacteria, at 4,086,592 to 4,087,023
_3971
Ga0059261_3972: Ga0059261_3972 - tRNA, at 4,087,190 to 4,087,266
_3972
Ga0059261_3973: Ga0059261_3973 - NADPH-dependent glutamate synthase beta chain and related oxidoreductases, at 4,087,379 to 4,088,677
_3973
Position (kb)
4087
4088 Strain fitness (log2 ratio)
-2
-1
0
1 at 4086.193 kb on + strand, within Ga0059261_3970 at 4086.193 kb on + strand, within Ga0059261_3970 at 4086.193 kb on + strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.194 kb on - strand, within Ga0059261_3970 at 4086.597 kb on + strand at 4086.597 kb on + strand at 4086.597 kb on + strand at 4086.597 kb on + strand at 4086.598 kb on - strand at 4086.677 kb on + strand, within Ga0059261_3971 at 4086.678 kb on - strand, within Ga0059261_3971 at 4086.678 kb on - strand, within Ga0059261_3971 at 4087.064 kb on + strand at 4087.064 kb on + strand at 4087.065 kb on - strand at 4087.065 kb on - strand at 4087.065 kb on - strand at 4087.113 kb on - strand at 4087.113 kb on - strand at 4087.507 kb on + strand at 4087.508 kb on - strand at 4087.716 kb on + strand, within Ga0059261_3973 at 4087.717 kb on - strand, within Ga0059261_3973 at 4087.717 kb on - strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.785 kb on + strand, within Ga0059261_3973 at 4087.786 kb on - strand, within Ga0059261_3973 at 4087.786 kb on - strand, within Ga0059261_3973 at 4087.786 kb on - strand, within Ga0059261_3973 at 4087.890 kb on + strand, within Ga0059261_3973 at 4087.890 kb on + strand, within Ga0059261_3973 at 4087.890 kb on + strand, within Ga0059261_3973 at 4087.890 kb on + strand, within Ga0059261_3973 at 4087.890 kb on + strand, within Ga0059261_3973 at 4087.891 kb on - strand, within Ga0059261_3973 at 4087.891 kb on - strand, within Ga0059261_3973 at 4087.891 kb on - strand, within Ga0059261_3973 at 4087.891 kb on - strand, within Ga0059261_3973
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 4,086,193 + Ga0059261_3970 0.72 -1.2 4,086,193 + Ga0059261_3970 0.72 -0.0 4,086,193 + Ga0059261_3970 0.72 +0.1 4,086,194 - Ga0059261_3970 0.72 -0.1 4,086,194 - Ga0059261_3970 0.72 -0.3 4,086,194 - Ga0059261_3970 0.72 +0.8 4,086,194 - Ga0059261_3970 0.72 +0.5 4,086,194 - Ga0059261_3970 0.72 +0.2 4,086,194 - Ga0059261_3970 0.72 -0.8 4,086,597 + -0.7 4,086,597 + -0.2 4,086,597 + +0.3 4,086,597 + -0.0 4,086,598 - -0.7 4,086,677 + Ga0059261_3971 0.20 +1.1 4,086,678 - Ga0059261_3971 0.20 -0.9 4,086,678 - Ga0059261_3971 0.20 +1.4 4,087,064 + +1.0 4,087,064 + +0.7 4,087,065 - +0.9 4,087,065 - +0.6 4,087,065 - +1.1 4,087,113 - +0.5 4,087,113 - +0.3 4,087,507 + +0.0 4,087,508 - -0.1 4,087,716 + Ga0059261_3973 0.26 -2.2 4,087,717 - Ga0059261_3973 0.26 +0.3 4,087,717 - Ga0059261_3973 0.26 -0.1 4,087,785 + Ga0059261_3973 0.31 +0.1 4,087,785 + Ga0059261_3973 0.31 -0.2 4,087,785 + Ga0059261_3973 0.31 -0.4 4,087,785 + Ga0059261_3973 0.31 -0.6 4,087,785 + Ga0059261_3973 0.31 -1.1 4,087,785 + Ga0059261_3973 0.31 -0.1 4,087,786 - Ga0059261_3973 0.31 -0.3 4,087,786 - Ga0059261_3973 0.31 +0.4 4,087,786 - Ga0059261_3973 0.31 +1.2 4,087,890 + Ga0059261_3973 0.39 +0.4 4,087,890 + Ga0059261_3973 0.39 +0.5 4,087,890 + Ga0059261_3973 0.39 +0.5 4,087,890 + Ga0059261_3973 0.39 +0.0 4,087,890 + Ga0059261_3973 0.39 -0.3 4,087,891 - Ga0059261_3973 0.39 -0.4 4,087,891 - Ga0059261_3973 0.39 +0.7 4,087,891 - Ga0059261_3973 0.39 +0.0 4,087,891 - Ga0059261_3973 0.39 +0.1
Or see this region's nucleotide sequence