Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0817

Experiment: benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0815 and Ga0059261_0816 are separated by 161 nucleotidesGa0059261_0816 and Ga0059261_0817 are separated by 43 nucleotidesGa0059261_0817 and Ga0059261_0818 are separated by 184 nucleotides Ga0059261_0815: Ga0059261_0815 - Uncharacterized protein involved in tellurite resistance, at 856,639 to 857,847 _0815 Ga0059261_0816: Ga0059261_0816 - hypothetical protein, at 858,009 to 858,179 _0816 Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037 _0817 Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109 _0818 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -1 0 1 2at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strandat 857.261 kb on + strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.414 kb on + strand, within Ga0059261_0815at 857.415 kb on - strand, within Ga0059261_0815at 857.908 kb on - strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.933 kb on - strandat 857.933 kb on - strandat 857.982 kb on + strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.997 kb on - strandat 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.477 kb on + strand, within Ga0059261_0817at 858.478 kb on - strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817at 859.417 kb on + strand, within Ga0059261_0817at 859.418 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.633 kb on + strand, within Ga0059261_0817at 859.634 kb on - strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 860.035 kb on + strandat 860.036 kb on - strandat 860.124 kb on + strandat 860.125 kb on - strandat 860.336 kb on + strand, within Ga0059261_0818at 860.336 kb on + strand, within Ga0059261_0818at 860.337 kb on - strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.474 kb on + strand, within Ga0059261_0818at 860.723 kb on + strandat 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml
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857,261 + Ga0059261_0815 0.51 +1.1
857,261 + Ga0059261_0815 0.51 -0.7
857,261 + Ga0059261_0815 0.51 +0.2
857,261 + Ga0059261_0815 0.51 +0.1
857,261 + Ga0059261_0815 0.51 -0.2
857,261 + Ga0059261_0815 0.51 +0.7
857,261 + +0.5
857,261 + Ga0059261_0815 0.51 -1.2
857,262 - Ga0059261_0815 0.52 +1.2
857,262 - Ga0059261_0815 0.52 -1.0
857,262 - Ga0059261_0815 0.52 +0.2
857,262 - Ga0059261_0815 0.52 +0.1
857,262 - Ga0059261_0815 0.52 +0.7
857,262 - Ga0059261_0815 0.52 -0.0
857,262 - Ga0059261_0815 0.52 +0.8
857,262 - Ga0059261_0815 0.52 +0.9
857,262 - Ga0059261_0815 0.52 +0.2
857,262 - Ga0059261_0815 0.52 -0.5
857,400 + Ga0059261_0815 0.63 -0.1
857,400 + Ga0059261_0815 0.63 -1.5
857,400 + Ga0059261_0815 0.63 +0.2
857,400 + Ga0059261_0815 0.63 +0.0
857,400 + Ga0059261_0815 0.63 -0.4
857,400 + Ga0059261_0815 0.63 +0.1
857,400 + Ga0059261_0815 0.63 +0.1
857,400 + Ga0059261_0815 0.63 +0.6
857,400 + Ga0059261_0815 0.63 -0.4
857,400 + Ga0059261_0815 0.63 +0.1
857,400 + Ga0059261_0815 0.63 -0.2
857,401 - Ga0059261_0815 0.63 +0.2
857,401 - Ga0059261_0815 0.63 +1.0
857,401 - Ga0059261_0815 0.63 +1.0
857,401 - Ga0059261_0815 0.63 -0.2
857,401 - Ga0059261_0815 0.63 +0.2
857,401 - Ga0059261_0815 0.63 +0.3
857,401 - Ga0059261_0815 0.63 +0.2
857,402 + Ga0059261_0815 0.63 -0.4
857,402 + Ga0059261_0815 0.63 -0.5
857,402 + Ga0059261_0815 0.63 +1.9
857,402 + Ga0059261_0815 0.63 -0.9
857,402 + Ga0059261_0815 0.63 +1.0
857,402 + Ga0059261_0815 0.63 +1.7
857,403 - Ga0059261_0815 0.63 +0.1
857,403 - Ga0059261_0815 0.63 +0.5
857,403 - Ga0059261_0815 0.63 -0.4
857,403 - Ga0059261_0815 0.63 -0.1
857,403 - Ga0059261_0815 0.63 +0.5
857,403 - Ga0059261_0815 0.63 +0.6
857,403 - Ga0059261_0815 0.63 -0.2
857,403 - Ga0059261_0815 0.63 -1.0
857,403 - Ga0059261_0815 0.63 +0.0
857,403 - Ga0059261_0815 0.63 -0.4
857,414 + Ga0059261_0815 0.64 -0.6
857,415 - Ga0059261_0815 0.64 -0.2
857,908 - +0.7
857,932 + +0.7
857,932 + +0.0
857,932 + +0.5
857,932 + -0.9
857,933 - -0.1
857,933 - +0.5
857,982 + +0.3
857,983 - +0.2
857,983 - -0.2
857,983 - +0.3
857,983 - -0.2
857,983 - -1.4
857,983 - -0.0
857,983 - +0.8
857,983 - +0.1
857,983 - +0.1
857,987 + -0.3
857,987 + -0.3
857,987 + -0.1
857,988 - +0.2
857,988 - -0.2
857,988 - +0.5
857,988 - -0.0
857,997 - -0.8
858,152 - Ga0059261_0816 0.84 +0.1
858,152 - Ga0059261_0816 0.84 +0.2
858,152 - Ga0059261_0816 0.84 -0.4
858,477 + Ga0059261_0817 0.14 -0.7
858,478 - Ga0059261_0817 0.14 -1.4
858,706 + Ga0059261_0817 0.27 +0.4
858,706 + Ga0059261_0817 0.27 -1.3
859,417 + Ga0059261_0817 0.66 -0.7
859,418 - Ga0059261_0817 0.66 +0.3
859,571 - Ga0059261_0817 0.74 -0.8
859,571 - Ga0059261_0817 0.74 +0.1
859,633 + Ga0059261_0817 0.78 +0.7
859,634 - Ga0059261_0817 0.78 -0.5
859,711 + Ga0059261_0817 0.82 +0.1
859,711 + Ga0059261_0817 0.82 -0.2
859,711 + Ga0059261_0817 0.82 -0.1
859,712 - Ga0059261_0817 0.82 -1.2
859,712 - Ga0059261_0817 0.82 +0.7
859,771 + Ga0059261_0817 0.85 +0.5
859,771 + Ga0059261_0817 0.85 -1.2
859,771 + Ga0059261_0817 0.85 -1.0
859,771 + Ga0059261_0817 0.85 +0.1
859,772 - Ga0059261_0817 0.85 -1.0
859,772 - Ga0059261_0817 0.85 +0.0
859,772 - Ga0059261_0817 0.85 -0.6
860,035 + -0.1
860,036 - +0.1
860,124 + -0.2
860,125 - -0.4
860,336 + Ga0059261_0818 0.13 -0.5
860,336 + Ga0059261_0818 0.13 +0.5
860,337 - Ga0059261_0818 0.13 +1.8
860,389 + Ga0059261_0818 0.19 +0.1
860,389 + Ga0059261_0818 0.19 -0.1
860,389 + Ga0059261_0818 0.19 -0.7
860,389 + Ga0059261_0818 0.19 +0.5
860,390 - Ga0059261_0818 0.19 +0.0
860,390 - Ga0059261_0818 0.19 -0.3
860,390 - Ga0059261_0818 0.19 +0.8
860,474 + Ga0059261_0818 0.28 -0.3
860,723 + +0.5
860,723 + Ga0059261_0818 0.56 +0.4
860,723 + Ga0059261_0818 0.56 -0.2
860,723 + Ga0059261_0818 0.56 -0.3
860,723 + Ga0059261_0818 0.56 +0.2
860,724 - Ga0059261_0818 0.57 -0.2
860,724 - Ga0059261_0818 0.57 +0.6
860,724 - Ga0059261_0818 0.57 -0.1
860,724 - Ga0059261_0818 0.57 -0.3
860,724 - Ga0059261_0818 0.57 +0.2
860,724 - Ga0059261_0818 0.57 -0.7
860,724 - Ga0059261_0818 0.57 -0.5
860,724 - Ga0059261_0818 0.57 -0.0
860,724 - Ga0059261_0818 0.57 +1.1
860,724 - Ga0059261_0818 0.57 -0.0
860,724 - Ga0059261_0818 0.57 +0.9
860,724 - Ga0059261_0818 0.57 -0.8
860,725 + Ga0059261_0818 0.57 -1.2
860,725 + Ga0059261_0818 0.57 -0.6
860,725 + Ga0059261_0818 0.57 -0.4
860,725 + Ga0059261_0818 0.57 -0.9
860,725 + Ga0059261_0818 0.57 +0.1
860,726 - Ga0059261_0818 0.57 +0.9
860,726 - Ga0059261_0818 0.57 +0.2
860,859 - Ga0059261_0818 0.72 -0.1
860,859 - Ga0059261_0818 0.72 +0.9
860,861 - Ga0059261_0818 0.72 -1.0
860,861 - Ga0059261_0818 0.72 +0.2
860,930 + Ga0059261_0818 0.80 +1.1
860,930 + Ga0059261_0818 0.80 +0.2
860,931 - Ga0059261_0818 0.80 +0.3
860,931 - Ga0059261_0818 0.80 +0.3

Or see this region's nucleotide sequence