Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0638 and Ga0059261_0639 are separated by 13 nucleotides Ga0059261_0639 and Ga0059261_0640 are separated by 180 nucleotides Ga0059261_0640 and Ga0059261_0641 are separated by 11 nucleotides Ga0059261_0641 and Ga0059261_0642 are separated by 17 nucleotides
Ga0059261_0638: Ga0059261_0638 - type I secretion outer membrane protein, TolC family, at 679,968 to 681,488
_0638
Ga0059261_0639: Ga0059261_0639 - Protein-L-isoaspartate carboxylmethyltransferase, at 681,502 to 682,161
_0639
Ga0059261_0640: Ga0059261_0640 - tRNA, at 682,342 to 682,415
_0640
Ga0059261_0641: Ga0059261_0641 - hypothetical protein, at 682,427 to 682,687
_0641
Ga0059261_0642: Ga0059261_0642 - Protein of unknown function (DUF3011), at 682,705 to 683,592
_0642
Position (kb) 682
683 Strain fitness (log2 ratio) -1
0
1 at 682.204 kb on + strand at 682.230 kb on - strand at 682.230 kb on - strand at 682.248 kb on - strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.785 kb on - strand at 682.985 kb on + strand, within Ga0059261_0642 at 682.985 kb on + strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 683.150 kb on + strand, within Ga0059261_0642 at 683.151 kb on - strand, within Ga0059261_0642 at 683.151 kb on - strand, within Ga0059261_0642 at 683.156 kb on + strand, within Ga0059261_0642 at 683.204 kb on + strand at 683.204 kb on + strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.286 kb on - strand, within Ga0059261_0642 at 683.366 kb on + strand, within Ga0059261_0642
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 682,204 + -1.3 682,230 - -1.2 682,230 - +0.3 682,248 - -1.0 682,754 + -0.4 682,754 + -0.4 682,754 + +0.1 682,754 + -0.1 682,754 + -0.1 682,754 + +0.1 682,754 + +0.3 682,755 - -0.1 682,755 - +0.7 682,755 - -0.4 682,755 - -0.7 682,785 - +0.4 682,985 + Ga0059261_0642 0.32 +0.2 682,985 + Ga0059261_0642 0.32 +0.3 682,986 - Ga0059261_0642 0.32 -0.8 682,986 - Ga0059261_0642 0.32 -0.8 682,986 - Ga0059261_0642 0.32 +1.1 682,986 - Ga0059261_0642 0.32 +0.2 683,150 + Ga0059261_0642 0.50 -0.5 683,151 - Ga0059261_0642 0.50 +0.2 683,151 - Ga0059261_0642 0.50 +0.0 683,156 + Ga0059261_0642 0.51 +0.1 683,204 + +1.1 683,204 + Ga0059261_0642 0.56 +1.3 683,205 - Ga0059261_0642 0.56 -0.1 683,205 - Ga0059261_0642 0.56 +0.3 683,205 - Ga0059261_0642 0.56 +0.8 683,286 - Ga0059261_0642 0.65 -0.0 683,366 + Ga0059261_0642 0.74 -0.1
Or see this region's nucleotide sequence