Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20810

Experiment: Recovery broth with 3-Acetylpyridine 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13940 and BBR_RS13945 are separated by 168 nucleotidesBBR_RS13945 and BBR_RS13950 are separated by 1 nucleotidesBBR_RS13950 and BBR_RS20810 are separated by 108 nucleotidesBBR_RS20810 and BBR_RS13955 are separated by 9 nucleotides BBR_RS13940: BBR_RS13940 - integrase, at 906,789 to 907,040 _RS13940 BBR_RS13945: BBR_RS13945 - Txe/YoeB family addiction module toxin, at 907,209 to 907,484 _RS13945 BBR_RS13950: BBR_RS13950 - type II toxin-antitoxin system antitoxin, RelB/DinJ family, at 907,486 to 907,740 _RS13950 BBR_RS20810: BBR_RS20810 - pirin, at 907,849 to 907,959 _RS20810 BBR_RS13955: BBR_RS13955 - argininosuccinate lyase, at 907,969 to 909,441 _RS13955 Position (kb) 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 906.892 kb on + strand, within BBR_RS13940at 906.895 kb on - strand, within BBR_RS13940at 906.935 kb on - strand, within BBR_RS13940at 906.935 kb on - strand, within BBR_RS13940at 906.989 kb on + strand, within BBR_RS13940at 907.005 kb on + strand, within BBR_RS13940at 907.072 kb on - strandat 907.078 kb on - strandat 907.078 kb on - strandat 907.153 kb on - strandat 907.155 kb on - strandat 907.158 kb on - strandat 907.158 kb on - strandat 907.174 kb on - strandat 907.183 kb on + strandat 907.184 kb on - strandat 907.207 kb on + strandat 907.207 kb on + strandat 907.207 kb on + strandat 907.207 kb on + strandat 907.214 kb on + strandat 907.215 kb on - strandat 907.215 kb on - strandat 907.234 kb on - strandat 907.307 kb on + strand, within BBR_RS13945at 907.350 kb on - strand, within BBR_RS13945at 907.360 kb on - strand, within BBR_RS13945at 907.434 kb on + strand, within BBR_RS13945at 907.479 kb on + strandat 907.904 kb on + strand, within BBR_RS20810at 907.920 kb on + strand, within BBR_RS20810at 907.920 kb on + strand, within BBR_RS20810at 907.953 kb on + strandat 907.953 kb on + strandat 907.961 kb on - strandat 907.977 kb on + strandat 907.995 kb on - strandat 908.037 kb on + strandat 908.046 kb on + strandat 908.046 kb on + strandat 908.054 kb on - strandat 908.054 kb on - strandat 908.054 kb on - strandat 908.109 kb on + strandat 908.116 kb on + strandat 908.116 kb on + strandat 908.141 kb on + strand, within BBR_RS13955at 908.144 kb on - strand, within BBR_RS13955at 908.152 kb on + strand, within BBR_RS13955at 908.165 kb on - strand, within BBR_RS13955at 908.182 kb on + strand, within BBR_RS13955at 908.182 kb on + strand, within BBR_RS13955at 908.182 kb on + strand, within BBR_RS13955at 908.190 kb on - strand, within BBR_RS13955at 908.207 kb on + strand, within BBR_RS13955at 908.247 kb on + strand, within BBR_RS13955at 908.281 kb on + strand, within BBR_RS13955at 908.401 kb on + strand, within BBR_RS13955at 908.402 kb on + strand, within BBR_RS13955at 908.457 kb on + strand, within BBR_RS13955at 908.496 kb on - strand, within BBR_RS13955at 908.561 kb on + strand, within BBR_RS13955at 908.569 kb on + strand, within BBR_RS13955at 908.584 kb on - strand, within BBR_RS13955at 908.592 kb on + strand, within BBR_RS13955at 908.606 kb on + strand, within BBR_RS13955at 908.681 kb on + strand, within BBR_RS13955at 908.681 kb on + strand, within BBR_RS13955at 908.735 kb on + strand, within BBR_RS13955at 908.778 kb on - strand, within BBR_RS13955at 908.784 kb on - strand, within BBR_RS13955at 908.916 kb on + strand, within BBR_RS13955at 908.916 kb on + strand, within BBR_RS13955at 908.922 kb on + strand, within BBR_RS13955at 908.922 kb on + strand, within BBR_RS13955at 908.923 kb on + strand, within BBR_RS13955at 908.923 kb on + strand, within BBR_RS13955at 908.929 kb on + strand, within BBR_RS13955

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with 3-Acetylpyridine 0.08 mM
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906,892 + BBR_RS13940 0.41 -1.4
906,895 - BBR_RS13940 0.42 -3.7
906,935 - BBR_RS13940 0.58 +0.7
906,935 - BBR_RS13940 0.58 +2.1
906,989 + BBR_RS13940 0.79 -2.4
907,005 + BBR_RS13940 0.86 -0.9
907,072 - +0.6
907,078 - +0.8
907,078 - +0.8
907,153 - -1.8
907,155 - -2.8
907,158 - -2.0
907,158 - +1.0
907,174 - -2.2
907,183 + +0.3
907,184 - -0.8
907,207 + +0.3
907,207 + +2.0
907,207 + +0.3
907,207 + +2.1
907,214 + -0.9
907,215 - -1.3
907,215 - -3.7
907,234 - +1.0
907,307 + BBR_RS13945 0.36 -1.9
907,350 - BBR_RS13945 0.51 +0.5
907,360 - BBR_RS13945 0.55 +0.8
907,434 + BBR_RS13945 0.82 -3.3
907,479 + -2.2
907,904 + BBR_RS20810 0.50 -2.0
907,920 + BBR_RS20810 0.64 -0.6
907,920 + BBR_RS20810 0.64 -2.5
907,953 + +3.5
907,953 + +1.1
907,961 - -0.1
907,977 + +1.4
907,995 - +1.0
908,037 + -0.0
908,046 + +0.1
908,046 + -1.6
908,054 - +0.6
908,054 - +0.9
908,054 - -0.4
908,109 + +2.2
908,116 + -0.4
908,116 + -0.5
908,141 + BBR_RS13955 0.12 -0.4
908,144 - BBR_RS13955 0.12 +0.8
908,152 + BBR_RS13955 0.12 -2.5
908,165 - BBR_RS13955 0.13 -2.7
908,182 + BBR_RS13955 0.14 -1.7
908,182 + BBR_RS13955 0.14 -3.1
908,182 + BBR_RS13955 0.14 -3.4
908,190 - BBR_RS13955 0.15 +0.6
908,207 + BBR_RS13955 0.16 -2.8
908,247 + BBR_RS13955 0.19 -0.3
908,281 + BBR_RS13955 0.21 -2.3
908,401 + BBR_RS13955 0.29 +0.4
908,402 + BBR_RS13955 0.29 -2.7
908,457 + BBR_RS13955 0.33 -1.7
908,496 - BBR_RS13955 0.36 -1.2
908,561 + BBR_RS13955 0.40 +0.2
908,569 + BBR_RS13955 0.41 -1.6
908,584 - BBR_RS13955 0.42 -1.9
908,592 + BBR_RS13955 0.42 +1.8
908,606 + BBR_RS13955 0.43 +0.1
908,681 + BBR_RS13955 0.48 -2.2
908,681 + BBR_RS13955 0.48 -0.0
908,735 + BBR_RS13955 0.52 -0.4
908,778 - BBR_RS13955 0.55 +0.9
908,784 - BBR_RS13955 0.55 +2.7
908,916 + BBR_RS13955 0.64 -1.4
908,916 + BBR_RS13955 0.64 +0.8
908,922 + BBR_RS13955 0.65 -0.4
908,922 + BBR_RS13955 0.65 +2.2
908,923 + BBR_RS13955 0.65 -3.4
908,923 + BBR_RS13955 0.65 -1.9
908,929 + BBR_RS13955 0.65 +1.6

Or see this region's nucleotide sequence