Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19040

Experiment: Recovery broth with 3-Acetylpyridine 0.08 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with 3-Acetylpyridine 0.08 mM
2,048,461	+		BBR_RS19030	0.83	+0.6
2,048,461	-		BBR_RS19030	0.83	-2.8
2,048,462	-		BBR_RS19030	0.83	+1.1
2,048,462	-		BBR_RS19030	0.83	+1.0
2,048,462	-		BBR_RS19030	0.83	+0.2
2,048,463	+		BBR_RS19030	0.83	-0.7
2,048,503	+		BBR_RS19030	0.87	-2.2
2,048,519	-		BBR_RS19030	0.88	+0.2
2,048,541	-		BBR_RS19030	0.90	+0.2
2,048,544	-				-3.2
2,048,553	+				-0.0
2,048,553	+				+2.0
2,048,560	+				-2.6
2,048,560	+				+0.5
2,048,560	+				+0.1
2,048,561	+				-0.1
2,048,568	-				+1.1
2,048,568	-				-0.4
2,048,568	-				-0.5
2,048,568	-				-0.1
2,048,570	+				-0.3
2,048,602	+				-2.8
2,048,610	-				+0.4
2,048,612	+				+0.7
2,048,620	-				-1.7
2,048,631	+				+0.2
2,048,631	+				+1.0
2,048,631	+				-0.6
2,048,631	+				-0.5
2,048,639	+				+0.9
2,048,639	+				+0.6
2,048,639	+				+1.4
2,048,639	+				-0.9
2,048,639	-				+1.3
2,048,639	-				+0.4
2,048,639	-				-1.4
2,048,639	-				-1.3
2,048,639	-				-2.4
2,048,639	-				+0.5
2,048,639	-				-2.9
2,048,639	-				+0.3
2,048,647	-				+1.1
2,048,647	-				-1.5
2,048,647	-				-0.0
2,048,647	-				-2.5
2,048,647	-				-0.6
2,048,680	+				+1.7
2,048,685	+				+1.5
2,048,690	+				-3.6
2,048,690	+				+0.2
2,048,693	-				-2.9
2,048,698	-				+2.0
2,048,753	+				-1.0
2,048,753	+				-3.7
2,048,774	-				+1.7
2,048,774	-				+1.2
2,048,774	-				+0.9
2,048,776	-				-4.6
2,048,781	-				+0.9
2,048,781	-				-1.1
2,048,813	+				+0.9
2,048,830	-				-1.7
2,048,832	+				-0.2
2,048,832	+				-0.9
2,048,832	+				-1.2
2,048,832	+				-2.2
2,048,832	+				-0.5
2,048,832	+				+0.4
2,048,832	+				+0.9
2,048,838	-				-0.4
2,048,840	-				+0.8
2,048,840	-				-1.8
2,048,840	-				-4.0
2,048,855	-				-1.3
2,048,863	+				-3.5
2,048,863	+				+0.7
2,048,868	-				+1.2
2,048,880	-				-0.8
2,048,889	+				-3.4
2,048,889	+				+0.2
2,048,897	-				-0.7
2,048,911	-				+0.2
2,048,930	-				+1.2
2,048,931	-				-0.3
2,048,968	+				-0.3
2,048,971	-				-0.2
2,048,976	-				-2.9
2,048,983	-				+1.6
2,048,983	-				-1.7
2,048,990	+				-3.0
2,048,999	+				-0.7
2,048,999	+				+0.7
2,048,999	+				+0.3
2,049,007	-				+0.6
2,049,007	-				+1.2
2,049,008	-				+0.7
2,049,043	-				+0.3
2,049,089	+				-1.4
2,049,101	+				-3.8
2,049,104	-				+0.6
2,049,142	-				-2.9
2,049,154	-				+0.3
2,049,157	+				+3.3
2,049,159	-				+1.5
2,049,165	+				+0.6
2,049,165	+				+1.6
2,049,165	+				-0.2
2,049,175	+				-0.9
2,049,405	+				+0.7
2,049,414	+				-0.7
2,049,451	+				+0.8
2,049,459	-				-0.3
2,049,463	+				-0.4
2,049,463	+				-0.1
2,049,463	+				-2.2
2,049,465	-				-2.8
2,049,465	-				-0.7
2,049,471	-				-0.3
2,049,471	-				-1.0
2,049,474	+				-1.6
2,049,476	-				+0.3
2,049,492	+				-2.0
2,049,500	+				-0.2
2,049,500	-				-0.0
2,049,500	-				-0.0
2,049,505	+				-2.3
2,049,506	-				+0.0
2,049,511	-				-0.1
2,049,513	-				+1.4
2,049,526	+		BBR_RS19040	0.10	+1.7
2,049,541	-		BBR_RS19040	0.12	+0.1
2,049,557	-		BBR_RS19040	0.14	-0.9
2,049,562	-		BBR_RS19040	0.15	+2.4
2,049,582	-		BBR_RS19040	0.18	+0.9
2,049,582	-		BBR_RS19040	0.18	-2.0
2,049,589	+		BBR_RS19040	0.19	-3.3
2,049,607	+		BBR_RS19040	0.22	-0.4
2,049,617	+		BBR_RS19040	0.23	-1.0
2,049,625	-		BBR_RS19040	0.24	-0.1
2,049,625	-		BBR_RS19040	0.24	-2.1
2,049,641	-		BBR_RS19040	0.26	+0.6
2,049,655	-		BBR_RS19040	0.28	+0.5
2,049,655	-		BBR_RS19040	0.28	+0.0
2,049,662	+		BBR_RS19040	0.29	-1.3
2,049,670	-		BBR_RS19040	0.31	-0.3
2,049,670	-		BBR_RS19040	0.31	-2.9
2,049,670	-		BBR_RS19040	0.31	+0.2
2,049,699	+		BBR_RS19040	0.35	-0.8
2,049,733	+		BBR_RS19040	0.40	+1.2
2,049,742	-		BBR_RS19040	0.41	-0.8
2,049,776	-		BBR_RS19040	0.46	-0.4
2,049,776	-		BBR_RS19040	0.46	+2.6
2,049,776	-		BBR_RS19040	0.46	-0.0
2,049,776	-		BBR_RS19040	0.46	-1.1
2,049,785	-		BBR_RS19040	0.47	-2.6
2,049,785	-		BBR_RS19040	0.47	+0.9
2,049,795	+		BBR_RS19040	0.48	+0.7
2,049,808	-		BBR_RS19040	0.50	-3.7
2,049,826	+		BBR_RS19040	0.53	+1.7
2,049,826	+		BBR_RS19040	0.53	+0.9
2,049,826	+		BBR_RS19040	0.53	-3.6
2,049,826	+		BBR_RS19040	0.53	-2.3
2,049,834	-		BBR_RS19040	0.54	+0.7
2,049,834	-		BBR_RS19040	0.54	-1.8
2,049,860	+		BBR_RS19040	0.58	-2.1
2,049,870	+		BBR_RS19040	0.59	-3.0
2,049,882	-		BBR_RS19040	0.61	-0.4
2,049,893	+		BBR_RS19040	0.62	-0.7
2,049,911	+		BBR_RS19040	0.65	+1.8
2,049,911	+		BBR_RS19040	0.65	-0.8
2,049,918	+		BBR_RS19040	0.66	-2.4
2,049,934	+		BBR_RS19040	0.68	+0.5
2,049,939	+		BBR_RS19040	0.69	-0.4
2,049,939	+		BBR_RS19040	0.69	+1.4
2,049,939	+		BBR_RS19040	0.69	-0.5
2,049,944	+		BBR_RS19040	0.70	+0.2
2,049,944	+		BBR_RS19040	0.70	+0.4
2,049,944	+		BBR_RS19040	0.70	-2.2
2,049,947	-		BBR_RS19040	0.70	+1.1
2,049,947	-		BBR_RS19040	0.70	+0.3
2,049,947	-		BBR_RS19040	0.70	+1.2
2,049,952	-		BBR_RS19040	0.71	-2.5
2,049,952	-		BBR_RS19040	0.71	-0.1
2,049,952	-		BBR_RS19040	0.71	-1.9
2,049,952	-		BBR_RS19040	0.71	-2.6
2,049,952	-		BBR_RS19040	0.71	+1.2
2,049,952	-		BBR_RS19040	0.71	-1.6
2,049,952	-		BBR_RS19040	0.71	-1.2
2,049,954	-		BBR_RS19040	0.71	-0.8
2,049,955	-		BBR_RS19040	0.71	+2.8
2,049,955	-		BBR_RS19040	0.71	-1.7
2,049,967	+		BBR_RS19040	0.73	-2.4
2,049,967	+		BBR_RS19040	0.73	+0.9
2,050,012	+		BBR_RS19040	0.79	-1.7
2,050,014	+		BBR_RS19040	0.80	-2.5
2,050,031	-		BBR_RS19040	0.82	-0.2
2,050,035	+		BBR_RS19040	0.83	+0.3
2,050,035	+		BBR_RS19040	0.83	+0.2
2,050,040	+		BBR_RS19040	0.83	-0.7
2,050,043	-		BBR_RS19040	0.84	+0.4
2,050,044	-		BBR_RS19040	0.84	-0.8
2,050,049	-		BBR_RS19040	0.85	-1.0
2,050,067	+		BBR_RS19040	0.87	-1.2
2,050,067	+		BBR_RS19040	0.87	-1.6
2,050,067	+		BBR_RS19040	0.87	-0.9
2,050,067	+		BBR_RS19040	0.87	-3.7
2,050,067	+		BBR_RS19040	0.87	+0.4
2,050,067	+		BBR_RS19040	0.87	-0.9
2,050,067	+		BBR_RS19040	0.87	+0.5
2,050,067	+		BBR_RS19040	0.87	+0.2
2,050,067	+		BBR_RS19040	0.87	-1.0
2,050,075	-		BBR_RS19040	0.88	-2.2
2,050,075	-		BBR_RS19040	0.88	-0.3
2,050,075	-		BBR_RS19040	0.88	-3.1
2,050,075	-		BBR_RS19040	0.88	-0.5
2,050,075	-		BBR_RS19040	0.88	-1.4
2,050,085	+		BBR_RS19040	0.90	-2.2
2,050,087	-				-3.7
2,050,087	-				+1.5
2,050,091	+				-2.9
2,050,098	-				+0.4
2,050,115	-				+1.3
2,050,120	-				-0.2
2,050,133	-				-0.7
2,050,179	-				+0.6
2,050,182	+				-3.0
2,050,187	+				-2.7
2,050,187	+				+0.7
2,050,187	+				-0.1
2,050,190	-				+0.3
2,050,193	+				+0.4
2,050,193	+				-1.5
2,050,209	-				-0.3
2,050,213	+				+0.4
2,050,237	+				+0.7
2,050,243	-				-0.5
2,050,245	-				+2.0
2,050,245	-				-0.7
2,050,245	-				+4.6
2,050,247	+				-0.1
2,050,247	+				-3.8
2,050,247	+				-0.2
2,050,257	-				-2.4
2,050,257	-				-1.8
2,050,270	-				-0.0
2,050,275	-				-1.8
2,050,275	-				+0.5
2,050,298	+				-3.3
2,050,306	-				+0.2
2,050,306	-				-1.3
2,050,327	-				-1.1
2,050,327	-				-3.0
2,050,337	-				+1.2
2,050,339	-				+1.1
2,050,350	+				+0.8
2,050,353	+				-0.0
2,050,358	-				+1.2
2,050,365	+				+0.5
2,050,365	+				+0.7
2,050,412	-		BBR_RS19045	0.12	+3.8
2,050,414	+		BBR_RS19045	0.12	-0.1
2,050,417	-		BBR_RS19045	0.12	+0.6
2,050,422	-		BBR_RS19045	0.12	+0.5
2,050,472	+		BBR_RS19045	0.16	+0.7
2,050,492	+		BBR_RS19045	0.18	-2.4
2,050,492	+		BBR_RS19045	0.18	+0.9
2,050,500	+		BBR_RS19045	0.19	-1.7
2,050,500	+		BBR_RS19045	0.19	-0.4
2,050,508	-		BBR_RS19045	0.19	-1.6
2,050,508	-		BBR_RS19045	0.19	+1.0
2,050,513	-		BBR_RS19045	0.20	+0.5
2,050,513	-		BBR_RS19045	0.20	-1.1
2,050,513	-		BBR_RS19045	0.20	+0.2
2,050,527	-		BBR_RS19045	0.21	+0.3
2,050,535	+		BBR_RS19045	0.21	-2.1
2,050,542	+		BBR_RS19045	0.22	-1.8
2,050,545	-		BBR_RS19045	0.22	-0.1
2,050,545	-		BBR_RS19045	0.22	+0.1
2,050,575	-		BBR_RS19045	0.24	-0.3
2,050,579	+		BBR_RS19045	0.25	-2.2
2,050,587	-		BBR_RS19045	0.25	-3.2
2,050,594	+		BBR_RS19045	0.26	+1.1
2,050,594	+		BBR_RS19045	0.26	+0.1
2,050,594	+		BBR_RS19045	0.26	+1.1
2,050,597	-		BBR_RS19045	0.26	+0.3
2,050,613	+		BBR_RS19045	0.27	-1.2
2,050,621	-		BBR_RS19045	0.28	+0.5
2,050,621	-		BBR_RS19045	0.28	+1.1
2,050,621	-		BBR_RS19045	0.28	-1.1
2,050,621	-		BBR_RS19045	0.28	-0.4
2,050,622	+		BBR_RS19045	0.28	+0.3
2,050,633	+		BBR_RS19045	0.29	-1.8
2,050,641	-		BBR_RS19045	0.30	+1.8
2,050,641	-		BBR_RS19045	0.30	-2.4
2,050,655	+		BBR_RS19045	0.31	-2.4
2,050,663	+		BBR_RS19045	0.31	-1.4
2,050,663	+		BBR_RS19045	0.31	-0.4
2,050,663	-		BBR_RS19045	0.31	+0.2
2,050,663	-		BBR_RS19045	0.31	+0.6
2,050,729	+		BBR_RS19045	0.37	-0.1
2,050,819	+		BBR_RS19045	0.44	-1.2
2,050,819	+		BBR_RS19045	0.44	-2.4
2,050,819	+		BBR_RS19045	0.44	+1.5
2,050,824	+		BBR_RS19045	0.44	-2.7
2,050,824	+		BBR_RS19045	0.44	+0.9
2,050,827	+		BBR_RS19045	0.44	-2.6
2,050,827	-		BBR_RS19045	0.44	-2.7
2,050,828	+		BBR_RS19045	0.44	-2.3
2,050,833	+		BBR_RS19045	0.45	-0.2
2,050,841	-		BBR_RS19045	0.45	+0.4
2,050,895	+		BBR_RS19045	0.50	-3.0
2,050,895	+		BBR_RS19045	0.50	-0.6
2,050,895	+		BBR_RS19045	0.50	-0.1
2,050,897	+		BBR_RS19045	0.50	+1.2
2,050,902	+		BBR_RS19045	0.50	+0.8
2,050,903	-		BBR_RS19045	0.50	-2.6
2,050,903	-		BBR_RS19045	0.50	-2.0
2,050,903	-		BBR_RS19045	0.50	-0.2
2,050,934	+		BBR_RS19045	0.53	-1.9
2,050,939	+		BBR_RS19045	0.53	+0.9
2,050,942	-		BBR_RS19045	0.53	+0.5
2,050,942	-		BBR_RS19045	0.53	+1.7
2,050,942	-		BBR_RS19045	0.53	+0.6
2,050,943	-		BBR_RS19045	0.53	-0.3
2,050,947	+		BBR_RS19045	0.54	+1.2
2,050,949	+		BBR_RS19045	0.54	-3.3
2,050,955	-		BBR_RS19045	0.54	-0.5
2,050,955	-		BBR_RS19045	0.54	-3.4
2,050,955	-		BBR_RS19045	0.54	-1.0
2,050,955	-		BBR_RS19045	0.54	+1.9
2,050,957	+		BBR_RS19045	0.54	-0.4
2,050,978	+		BBR_RS19045	0.56	-2.6
2,050,984	+		BBR_RS19045	0.57	-0.5
2,051,013	-		BBR_RS19045	0.59	-0.8
2,051,013	-		BBR_RS19045	0.59	-3.5
2,051,017	-		BBR_RS19045	0.59	-0.4
2,051,053	+		BBR_RS19045	0.62	+1.2
2,051,053	+		BBR_RS19045	0.62	-0.6
2,051,061	-		BBR_RS19045	0.63	-1.7
2,051,071	-		BBR_RS19045	0.63	+0.2
2,051,071	-		BBR_RS19045	0.63	+0.6
2,051,081	-		BBR_RS19045	0.64	+1.4
2,051,087	+		BBR_RS19045	0.65	-0.6
2,051,088	-		BBR_RS19045	0.65	+0.7
2,051,130	-		BBR_RS19045	0.68	-3.5
2,051,132	+		BBR_RS19045	0.68	-0.5
2,051,133	+		BBR_RS19045	0.68	-0.1
2,051,139	+		BBR_RS19045	0.69	-0.1
2,051,140	-		BBR_RS19045	0.69	+0.4
2,051,142	-		BBR_RS19045	0.69	-3.1
2,051,154	+		BBR_RS19045	0.70	-1.2