Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3183

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3182 and DvMF_3183 are separated by 277 nucleotidesDvMF_3183 and DvMF_3184 are separated by 302 nucleotidesDvMF_3184 and DvMF_3185 are separated by 93 nucleotides DvMF_3182: DvMF_3182 - hypothetical protein (RefSeq), at 4,014,527 to 4,015,042 _3182 DvMF_3183: DvMF_3183 - transcriptional regulator, TraR/DksA family (RefSeq), at 4,015,320 to 4,015,544 _3183 DvMF_3184: DvMF_3184 - Cupin 2 conserved barrel domain protein (RefSeq), at 4,015,847 to 4,016,251 _3184 DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355 _3185 Position (kb) 4015 4016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4014.478 kb on - strandat 4014.587 kb on + strand, within DvMF_3182at 4014.636 kb on + strand, within DvMF_3182at 4014.688 kb on - strand, within DvMF_3182at 4014.865 kb on + strand, within DvMF_3182at 4014.865 kb on + strand, within DvMF_3182at 4014.905 kb on - strand, within DvMF_3182at 4014.975 kb on - strand, within DvMF_3182at 4015.243 kb on - strandat 4015.379 kb on - strand, within DvMF_3183at 4015.421 kb on - strand, within DvMF_3183at 4015.505 kb on + strand, within DvMF_3183at 4015.561 kb on + strandat 4015.977 kb on + strand, within DvMF_3184at 4016.052 kb on + strand, within DvMF_3184at 4016.312 kb on - strandat 4016.328 kb on + strandat 4016.490 kb on - strand, within DvMF_3185

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
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4,014,478 - -1.9
4,014,587 + DvMF_3182 0.12 -2.1
4,014,636 + DvMF_3182 0.21 -1.8
4,014,688 - DvMF_3182 0.31 -0.6
4,014,865 + DvMF_3182 0.66 -0.6
4,014,865 + DvMF_3182 0.66 +0.5
4,014,905 - DvMF_3182 0.73 -0.5
4,014,975 - DvMF_3182 0.87 -1.6
4,015,243 - +0.4
4,015,379 - DvMF_3183 0.26 -0.4
4,015,421 - DvMF_3183 0.45 +0.4
4,015,505 + DvMF_3183 0.82 +0.2
4,015,561 + -4.1
4,015,977 + DvMF_3184 0.32 -0.7
4,016,052 + DvMF_3184 0.51 -0.2
4,016,312 - -0.4
4,016,328 + -0.2
4,016,490 - DvMF_3185 0.14 -0.6

Or see this region's nucleotide sequence