Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2982

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2980 and DvMF_2981 are separated by 110 nucleotidesDvMF_2981 and DvMF_2982 are separated by 181 nucleotidesDvMF_2982 and DvMF_2983 are separated by 97 nucleotidesDvMF_2983 and DvMF_2984 are separated by 176 nucleotides DvMF_2980: DvMF_2980 - Rhodanese domain protein (RefSeq), at 3,754,410 to 3,754,916 _2980 DvMF_2981: DvMF_2981 - VanZ family protein (RefSeq), at 3,755,027 to 3,755,596 _2981 DvMF_2982: DvMF_2982 - SlyX family protein (RefSeq), at 3,755,778 to 3,755,999 _2982 DvMF_2983: DvMF_2983 - protein of unknown function DUF55 (RefSeq), at 3,756,097 to 3,756,564 _2983 DvMF_2984: DvMF_2984 - hypothetical protein (RefSeq), at 3,756,741 to 3,759,431 _2984 Position (kb) 3755 3756Strain fitness (log2 ratio) -2 -1 0 1at 3754.867 kb on + strandat 3755.058 kb on + strandat 3755.066 kb on - strandat 3755.328 kb on - strand, within DvMF_2981at 3755.354 kb on + strand, within DvMF_2981at 3755.551 kb on - strandat 3755.598 kb on - strandat 3755.979 kb on + strandat 3756.027 kb on - strandat 3756.238 kb on - strand, within DvMF_2983at 3756.355 kb on - strand, within DvMF_2983at 3756.422 kb on - strand, within DvMF_2983at 3756.422 kb on - strand, within DvMF_2983at 3756.539 kb on + strandat 3756.616 kb on + strandat 3756.859 kb on - strandat 3756.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
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3,754,867 + -0.3
3,755,058 + -1.9
3,755,066 - -1.3
3,755,328 - DvMF_2981 0.53 -1.0
3,755,354 + DvMF_2981 0.57 -0.5
3,755,551 - -1.1
3,755,598 - -0.4
3,755,979 + -2.3
3,756,027 - -0.9
3,756,238 - DvMF_2983 0.30 -1.1
3,756,355 - DvMF_2983 0.55 -0.3
3,756,422 - DvMF_2983 0.69 -0.2
3,756,422 - DvMF_2983 0.69 +0.2
3,756,539 + +0.0
3,756,616 + -1.6
3,756,859 - -2.0
3,756,980 - -0.7

Or see this region's nucleotide sequence