Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2859 and DvMF_2860 are separated by 265 nucleotides DvMF_2860 and DvMF_2861 are separated by 227 nucleotides DvMF_2861 and DvMF_2862 are separated by 182 nucleotides DvMF_2862 and DvMF_2863 are separated by 235 nucleotides
DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665
_2859
DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329
_2860
DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483
_2861
DvMF_2862: DvMF_2862 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 3,613,666 to 3,614,157
_2862
DvMF_2863: DvMF_2863 - AsmA family protein (RefSeq), at 3,614,393 to 3,616,528
_2863
Position (kb)
3612
3613
3614 Strain fitness (log2 ratio)
-1
0
1 at 3611.736 kb on - strand at 3611.976 kb on + strand, within DvMF_2860 at 3612.318 kb on - strand at 3612.690 kb on + strand, within DvMF_2861 at 3612.698 kb on - strand, within DvMF_2861 at 3612.706 kb on + strand, within DvMF_2861 at 3612.984 kb on + strand, within DvMF_2861 at 3613.182 kb on + strand, within DvMF_2861 at 3613.759 kb on - strand, within DvMF_2862 at 3614.016 kb on - strand, within DvMF_2862 at 3614.138 kb on + strand at 3614.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM remove 3,611,736 - +0.7 3,611,976 + DvMF_2860 0.11 -0.6 3,612,318 - -0.3 3,612,690 + DvMF_2861 0.14 -0.6 3,612,698 - DvMF_2861 0.15 -1.1 3,612,706 + DvMF_2861 0.16 -0.8 3,612,984 + DvMF_2861 0.46 -0.4 3,613,182 + DvMF_2861 0.67 -0.4 3,613,759 - DvMF_2862 0.19 -0.4 3,614,016 - DvMF_2862 0.71 -1.0 3,614,138 + -0.4 3,614,218 + -0.7
Or see this region's nucleotide sequence