Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0031

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1050 and DvMF_R0030 are separated by 515 nucleotidesDvMF_R0030 and DvMF_R0031 are separated by 105 nucleotidesDvMF_R0031 and DvMF_R0032 are separated by 168 nucleotidesDvMF_R0032 and DvMF_R0033 are separated by 33 nucleotidesDvMF_R0033 and DvMF_R0034 are separated by 112 nucleotides DvMF_1050: DvMF_1050 - Inositol-phosphate phosphatase (RefSeq), at 1,276,762 to 1,277,601 _1050 DvMF_R0030: DvMF_R0030 - 5S ribosomal RNA (RefSeq), at 1,278,117 to 1,278,231 _R0030 DvMF_R0031: DvMF_R0031 - 23S ribosomal RNA (RefSeq), at 1,278,337 to 1,281,262 _R0031 DvMF_R0032: DvMF_R0032 - tRNA-Ala (RefSeq), at 1,281,431 to 1,281,506 _R0032 DvMF_R0033: DvMF_R0033 - tRNA-Ile (RefSeq), at 1,281,540 to 1,281,616 _R0033 DvMF_R0034: DvMF_R0034 - 16S ribosomal RNA (RefSeq), at 1,281,729 to 1,283,264 _R0034 Position (kb) 1278 1279 1280 1281 1282Strain fitness (log2 ratio) -1 0 1at 1277.338 kb on - strand, within DvMF_1050at 1277.630 kb on - strandat 1277.657 kb on - strandat 1277.672 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
remove
1,277,338 - DvMF_1050 0.69 -0.2
1,277,630 - -1.7
1,277,657 - +0.0
1,277,672 + -0.3

Or see this region's nucleotide sequence