Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0939

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0938 and DvMF_0939 are separated by 306 nucleotidesDvMF_0939 and DvMF_0940 are separated by 167 nucleotides DvMF_0938: DvMF_0938 - putative oxidoreductase (RefSeq), at 1,138,022 to 1,139,467 _0938 DvMF_0939: DvMF_0939 - hypothetical protein (RefSeq), at 1,139,774 to 1,140,064 _0939 DvMF_0940: DvMF_0940 - histidinol phosphate phosphatase HisJ family (RefSeq), at 1,140,232 to 1,141,056 _0940 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1138.933 kb on - strand, within DvMF_0938at 1138.967 kb on + strand, within DvMF_0938at 1139.231 kb on - strand, within DvMF_0938at 1139.265 kb on - strand, within DvMF_0938at 1139.883 kb on + strand, within DvMF_0939at 1139.895 kb on + strand, within DvMF_0939at 1139.973 kb on + strand, within DvMF_0939at 1140.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
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1,138,933 - DvMF_0938 0.63 -2.2
1,138,967 + DvMF_0938 0.65 -1.5
1,139,231 - DvMF_0938 0.84 -4.1
1,139,265 - DvMF_0938 0.86 -3.7
1,139,883 + DvMF_0939 0.37 -0.8
1,139,895 + DvMF_0939 0.42 -0.2
1,139,973 + DvMF_0939 0.68 -1.8
1,140,150 - -0.7

Or see this region's nucleotide sequence