Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0852 and DvMF_0853 are separated by 12 nucleotides DvMF_0853 and DvMF_0854 are separated by 108 nucleotides DvMF_0854 and DvMF_0855 are separated by 2 nucleotides DvMF_0855 and DvMF_0856 are separated by 40 nucleotides
DvMF_0852: DvMF_0852 - protein of unknown function DUF140 (RefSeq), at 1,030,453 to 1,031,256
_0852
DvMF_0853: DvMF_0853 - ABC transporter related (RefSeq), at 1,031,269 to 1,032,090
_0853
DvMF_0854: DvMF_0854 - Mammalian cell entry related domain protein (RefSeq), at 1,032,199 to 1,032,645
_0854
DvMF_0855: DvMF_0855 - toluene tolerance family protein (RefSeq), at 1,032,648 to 1,033,352
_0855
DvMF_0856: DvMF_0856 - VacJ family lipoprotein (RefSeq), at 1,033,393 to 1,034,172
_0856
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1031.557 kb on - strand, within DvMF_0853 at 1031.562 kb on - strand, within DvMF_0853 at 1032.309 kb on + strand, within DvMF_0854 at 1032.330 kb on + strand, within DvMF_0854 at 1032.405 kb on + strand, within DvMF_0854 at 1032.461 kb on - strand, within DvMF_0854 at 1032.630 kb on + strand at 1032.707 kb on + strand at 1032.797 kb on - strand, within DvMF_0855 at 1032.852 kb on + strand, within DvMF_0855 at 1033.015 kb on + strand, within DvMF_0855 at 1033.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM remove 1,031,557 - DvMF_0853 0.35 -0.9 1,031,562 - DvMF_0853 0.36 -0.9 1,032,309 + DvMF_0854 0.25 -2.0 1,032,330 + DvMF_0854 0.29 -1.9 1,032,405 + DvMF_0854 0.46 -1.4 1,032,461 - DvMF_0854 0.59 +0.1 1,032,630 + -2.2 1,032,707 + -0.6 1,032,797 - DvMF_0855 0.21 -1.7 1,032,852 + DvMF_0855 0.29 -2.8 1,033,015 + DvMF_0855 0.52 +0.1 1,033,286 + +0.2
Or see this region's nucleotide sequence