Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0695

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0694 and DvMF_0695 are separated by 177 nucleotidesDvMF_0695 and DvMF_0696 are separated by 20 nucleotides DvMF_0694: DvMF_0694 - protein of unknown function DUF1555 (RefSeq), at 841,599 to 842,453 _0694 DvMF_0695: DvMF_0695 - CAAX prenyl protease-related protein (RefSeq), at 842,631 to 843,341 _0695 DvMF_0696: DvMF_0696 - secretion protein HlyD family protein (RefSeq), at 843,362 to 844,423 _0696 Position (kb) 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1at 841.763 kb on + strand, within DvMF_0694at 842.196 kb on + strand, within DvMF_0694at 842.275 kb on + strand, within DvMF_0694at 842.432 kb on - strandat 842.448 kb on + strandat 842.711 kb on + strand, within DvMF_0695at 842.750 kb on - strand, within DvMF_0695at 842.786 kb on + strand, within DvMF_0695at 842.849 kb on - strand, within DvMF_0695at 843.005 kb on - strand, within DvMF_0695at 843.188 kb on - strand, within DvMF_0695at 843.486 kb on - strand, within DvMF_0696at 843.749 kb on + strand, within DvMF_0696at 843.767 kb on - strand, within DvMF_0696at 843.769 kb on + strand, within DvMF_0696at 843.769 kb on + strand, within DvMF_0696at 843.919 kb on + strand, within DvMF_0696at 843.945 kb on - strand, within DvMF_0696at 844.237 kb on - strand, within DvMF_0696at 844.248 kb on - strand, within DvMF_0696at 844.254 kb on + strand, within DvMF_0696at 844.262 kb on - strand, within DvMF_0696at 844.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
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841,763 + DvMF_0694 0.19 -0.6
842,196 + DvMF_0694 0.70 -2.1
842,275 + DvMF_0694 0.79 -3.5
842,432 - -0.7
842,448 + -3.5
842,711 + DvMF_0695 0.11 -0.3
842,750 - DvMF_0695 0.17 -1.7
842,786 + DvMF_0695 0.22 +0.3
842,849 - DvMF_0695 0.31 -0.6
843,005 - DvMF_0695 0.53 -0.1
843,188 - DvMF_0695 0.78 -2.2
843,486 - DvMF_0696 0.12 -0.5
843,749 + DvMF_0696 0.36 -0.5
843,767 - DvMF_0696 0.38 +0.0
843,769 + DvMF_0696 0.38 -0.1
843,769 + DvMF_0696 0.38 -0.0
843,919 + DvMF_0696 0.52 -2.3
843,945 - DvMF_0696 0.55 -0.2
844,237 - DvMF_0696 0.82 -0.8
844,248 - DvMF_0696 0.83 -1.1
844,254 + DvMF_0696 0.84 -0.2
844,262 - DvMF_0696 0.85 +0.2
844,327 + -0.5

Or see this region's nucleotide sequence