Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0533 and DvMF_0534 are separated by 6 nucleotides DvMF_0534 and DvMF_0535 are separated by 9 nucleotides DvMF_0535 and DvMF_0536 overlap by 8 nucleotides DvMF_0536 and DvMF_0537 are separated by 82 nucleotides
DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360
_0533
DvMF_0534: DvMF_0534 - caa(3)-type oxidase, subunit IV (RefSeq), at 630,367 to 630,657
_0534
DvMF_0535: DvMF_0535 - cytochrome c oxidase subunit III (RefSeq), at 630,667 to 631,263
_0535
DvMF_0536: DvMF_0536 - cytochrome c oxidase, subunit I (RefSeq), at 631,256 to 632,881
_0536
DvMF_0537: DvMF_0537 - Uncharacterized protein involved in biogenesis of respiratory and photosynthetic systems-like protein (RefSeq), at 632,964 to 634,211
_0537
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 630.444 kb on + strand, within DvMF_0534 at 630.590 kb on - strand, within DvMF_0534 at 630.596 kb on + strand, within DvMF_0534 at 630.730 kb on - strand, within DvMF_0535 at 630.815 kb on - strand, within DvMF_0535 at 630.828 kb on + strand, within DvMF_0535 at 631.174 kb on - strand, within DvMF_0535 at 631.353 kb on - strand at 631.629 kb on + strand, within DvMF_0536 at 632.184 kb on - strand, within DvMF_0536 at 632.235 kb on - strand, within DvMF_0536 at 632.245 kb on + strand, within DvMF_0536 at 632.290 kb on + strand, within DvMF_0536 at 632.421 kb on + strand, within DvMF_0536 at 632.640 kb on - strand, within DvMF_0536 at 632.739 kb on + strand at 633.736 kb on - strand, within DvMF_0537
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM remove 630,444 + DvMF_0534 0.26 -0.9 630,590 - DvMF_0534 0.77 -0.3 630,596 + DvMF_0534 0.79 -0.6 630,730 - DvMF_0535 0.11 -1.0 630,815 - DvMF_0535 0.25 -0.6 630,828 + DvMF_0535 0.27 -0.1 631,174 - DvMF_0535 0.85 -0.8 631,353 - -0.7 631,629 + DvMF_0536 0.23 -0.2 632,184 - DvMF_0536 0.57 -1.6 632,235 - DvMF_0536 0.60 -1.8 632,245 + DvMF_0536 0.61 -1.0 632,290 + DvMF_0536 0.64 -0.6 632,421 + DvMF_0536 0.72 -0.2 632,640 - DvMF_0536 0.85 -0.8 632,739 + -3.2 633,736 - DvMF_0537 0.62 -1.2
Or see this region's nucleotide sequence