Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0345 and DvMF_0346 are separated by 74 nucleotides DvMF_0346 and DvMF_0347 are separated by 163 nucleotides DvMF_0347 and DvMF_0348 are separated by 199 nucleotides DvMF_0348 and secG are separated by 38 nucleotides
DvMF_0345: DvMF_0345 - Inositol-phosphate phosphatase (RefSeq), at 404,295 to 405,161
_0345
DvMF_0346: DvMF_0346 - NUDIX hydrolase (RefSeq), at 405,236 to 405,784
_0346
DvMF_0347: DvMF_0347 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 405,948 to 406,526
_0347
DvMF_0348: DvMF_0348 - Triose-phosphate isomerase (RefSeq), at 406,726 to 407,481
_0348
DvMF_0349: secG - preprotein translocase subunit SecG (RefSeq), at 407,520 to 407,864
secG
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 405.204 kb on + strand at 405.234 kb on + strand at 405.242 kb on - strand at 405.315 kb on + strand, within DvMF_0346 at 405.336 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.683 kb on + strand, within DvMF_0346 at 405.691 kb on - strand, within DvMF_0346 at 405.809 kb on - strand at 405.809 kb on - strand at 405.953 kb on + strand at 406.241 kb on - strand, within DvMF_0347 at 406.473 kb on - strand at 406.511 kb on + strand at 406.529 kb on - strand at 406.529 kb on - strand at 406.646 kb on - strand at 406.696 kb on + strand at 406.714 kb on + strand at 407.179 kb on + strand, within DvMF_0348 at 407.238 kb on + strand, within DvMF_0348
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM remove 405,204 + -0.7 405,234 + -0.3 405,242 - -0.5 405,315 + DvMF_0346 0.14 -1.1 405,336 + DvMF_0346 0.18 -1.2 405,618 + DvMF_0346 0.70 -1.4 405,618 + DvMF_0346 0.70 -3.4 405,683 + DvMF_0346 0.81 -0.7 405,691 - DvMF_0346 0.83 -1.6 405,809 - -1.0 405,809 - +0.1 405,953 + -0.6 406,241 - DvMF_0347 0.51 -1.9 406,473 - -2.1 406,511 + -0.1 406,529 - +0.7 406,529 - -0.9 406,646 - +1.1 406,696 + -0.4 406,714 + -2.4 407,179 + DvMF_0348 0.60 -0.4 407,238 + DvMF_0348 0.68 -1.7
Or see this region's nucleotide sequence