Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0165

Experiment: MoYLS4 with 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0164 and DvMF_0165 are separated by 121 nucleotidesDvMF_0165 and DvMF_0166 are separated by 11 nucleotides DvMF_0164: DvMF_0164 - hypothetical protein (RefSeq), at 178,837 to 179,658 _0164 DvMF_0165: DvMF_0165 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 179,780 to 180,337 _0165 DvMF_0166: DvMF_0166 - Formate dehydrogenase (RefSeq), at 180,349 to 182,484 _0166 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1at 178.788 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.833 kb on - strandat 178.853 kb on - strandat 178.882 kb on - strandat 178.962 kb on + strand, within DvMF_0164at 179.071 kb on - strand, within DvMF_0164at 179.499 kb on + strand, within DvMF_0164at 179.523 kb on + strand, within DvMF_0164at 180.066 kb on + strand, within DvMF_0165at 180.110 kb on - strand, within DvMF_0165at 180.407 kb on - strandat 180.502 kb on + strandat 180.783 kb on + strand, within DvMF_0166at 180.783 kb on + strand, within DvMF_0166at 180.970 kb on + strand, within DvMF_0166at 181.079 kb on + strand, within DvMF_0166at 181.167 kb on + strand, within DvMF_0166at 181.175 kb on - strand, within DvMF_0166at 181.251 kb on + strand, within DvMF_0166at 181.299 kb on + strand, within DvMF_0166

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 5-Hydroxymethylfurfural 10 mM
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178,788 + -0.7
178,796 - +0.1
178,796 - -0.4
178,833 - -1.7
178,853 - +0.6
178,882 - -0.9
178,962 + DvMF_0164 0.15 -0.8
179,071 - DvMF_0164 0.28 -2.3
179,499 + DvMF_0164 0.81 -0.3
179,523 + DvMF_0164 0.83 +0.1
180,066 + DvMF_0165 0.51 -0.9
180,110 - DvMF_0165 0.59 +0.4
180,407 - -1.2
180,502 + -1.2
180,783 + DvMF_0166 0.20 +0.2
180,783 + DvMF_0166 0.20 -2.2
180,970 + DvMF_0166 0.29 -1.5
181,079 + DvMF_0166 0.34 -0.3
181,167 + DvMF_0166 0.38 -0.4
181,175 - DvMF_0166 0.39 +0.4
181,251 + DvMF_0166 0.42 -0.6
181,299 + DvMF_0166 0.44 -2.4

Or see this region's nucleotide sequence